Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_1170 |
Symbol | ispG |
ID | 5669583 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | + |
Start bp | 1394101 |
End bp | 1395255 |
Gene Length | 1155 bp |
Protein Length | 384 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641240102 |
Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
Protein accession | YP_001505530 |
Protein GI | 158313022 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.151599 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACCGTAA CTCTGGGCAT GCCCGCCGCT CCGCCTCGTC CGGTCGGAAC GCGGCGGCTC AGCCGGCAGA TCCACGTGGG CAACGTCCCG GTCGGAGGTG ACGCCCCGGT CTCCATCCAG TCGATGTGCA CCACGCTGAC CTCGGACGTC AACGCGACCC TTCAGCAGAT CGCCCAGCTC ACCGCCGCCG GATGTCAGAT CGTGCGGGTG GCGGTGCCCA GCCAGGACGA CGCCGACGCG CTGCCGACGA TCGCCCGCAA GTCGCCGATC CCGATCATCG CCGACATCCA CTTCCAGCCG AAGTACGTCT TCGCCGCGAT CGACGCCGGG TGCGCCGCCG TCCGGGTGAA CCCGGGCAAC ATCAAGCAGT TCGACGACAA GGTCGGCGAG ATCGCCCGCG CCGCCAAGGC GGCCGGCACC CCGATTCGGA TCGGGGTCAA CGCCGGGTCA CTCGACAAGC GCCTGCTGGA GAAGTACGGG AAGGCCACTC CGGAGGCGCT GGTCGAGTCG GCGCTGTGGG AGGCCTCGCT GTTCGAGGAG CACGACTTCC GGGACATCAA GATCTCGGTG AAGCACAACG ACCCCGTGAT CATGATTCAG GCCTACCGGC TGCTGGCCCA GGCCTGTGAC TACCCGCTGC ACCTCGGCGT CACCGAGGCG GGCCCGGCGT TCCAGGGCAC GGTGAAGTCC GCGGTGGCCT TCGGCGCGCT GCTGTCCGAG GGCATCGGCG ACACGATCCG GGTCTCGCTG TCGGCGCCGC CCATCGAGGA GATCAAGGTC GCCTCGGCGA TCCTGGAGTC GCTCGGGCTG CGCGAGCGCA AGCTGGAGAT CGTCTCCTGC CCGTCCTGCG GCCGCGCCCA GGTGGACGTC TACACCCTGG CCAACGAGGT CAGCGCCGGC CTGGAGGGCA TGGAGGTGCC GCTGCGGGTG GCCGTCATGG GCTGCGTCGT CAACGGCCCC GGTGAGGCCC GCGAAGCCGA CCTCGGCGTT GCCTCCGGCA ACGGCAAGGG TCAGATCTTC GTGCGCGGAA AGGTCATCAA GACGGTGCCC GAGGCGCAGA TCGTGGAGAC TCTCATCGAG GAGGCCATGC GGCTGGCCGA GCAGATGGAG GCCGACGGCG CGGCCTCCGG CTCGCCGTCG GTGTCCGTGG CCTAG
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Protein sequence | MTVTLGMPAA PPRPVGTRRL SRQIHVGNVP VGGDAPVSIQ SMCTTLTSDV NATLQQIAQL TAAGCQIVRV AVPSQDDADA LPTIARKSPI PIIADIHFQP KYVFAAIDAG CAAVRVNPGN IKQFDDKVGE IARAAKAAGT PIRIGVNAGS LDKRLLEKYG KATPEALVES ALWEASLFEE HDFRDIKISV KHNDPVIMIQ AYRLLAQACD YPLHLGVTEA GPAFQGTVKS AVAFGALLSE GIGDTIRVSL SAPPIEEIKV ASAILESLGL RERKLEIVSC PSCGRAQVDV YTLANEVSAG LEGMEVPLRV AVMGCVVNGP GEAREADLGV ASGNGKGQIF VRGKVIKTVP EAQIVETLIE EAMRLAEQME ADGAASGSPS VSVA
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