Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_0832 |
Symbol | |
ID | 5669248 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | - |
Start bp | 973315 |
End bp | 974136 |
Gene Length | 822 bp |
Protein Length | 273 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641239761 |
Product | hemolysin III family channel protein |
Protein accession | YP_001505196 |
Protein GI | 158312688 |
COG category | [R] General function prediction only |
COG ID | [COG1272] Predicted membrane protein, hemolysin III homolog |
TIGRFAM ID | [TIGR01065] channel protein, hemolysin III family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.53621 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCAGAGTC GCGCGGTAGG CAGTACGCGG AAACGTAGGA TCCATCACGC ACCGGGACGG ACTGACCGCC GCTGGTCGGC TCCGCTTCGT GACCCCGATG CCGACCCGAT ATCGTTCTGC CCCGTGGCCT CCCCCGCGCG GCAGACCGCC GGCTCCGACG ACGCGACCCC GAACTCCCAT CCGCGTGACC TGGTGCGACC GCGCATGCGG GGGTGGCTAC ACACCGGAGC ATTCCCCGTG AGCCTCGCAC TCGGCGTCAT TGCGGTGGCA CTGGCCACGA CACTGAGGGC CCGCCTCGGG GTGGCCGTTT ACGCGATCAG CATTGCCGCA CTGTTCGGAA CCAGTGCCCT CTATCACCGA AAAATGTGGT CGACCTCACG CGCCCGCTCG CTGATGAAGC GCCTCGACCA CTCTATGATC TTCATTTTCA TCGCCGGCAC CTACACCCCA TTCGCCCTCA TCGCGATGCC GGAGCACACC GCACGCATCG TGCTGGCCGT CGTCTGGGGC GGCGCGGCGC TGGGCGTGCT GGTGCGCATG CTGTGGCTGC ACTCGCCGCG CTTCCTGATC GTCCCGCTCT ACATCGCGCT GGGCTGGGTC GCCGTCTTCG TCATACCCGA GCTGATGCAC CAGGCCGGCG TGGCCGCGAT GGTCCTGCTA CTGGTGGGCG GCGCCTGCTA CAGCCTCGGC GCGCTGGTGT ACGCCACCCG CCGGCCTGAC CCGGCGCCCA GCACCTTCGG GTACCACGAG GTGTTCCACG CATTCACCCT CGTCGCCGCC GGCTGTCACT ACATAGCACT GATGATCGCC ATGCTCGGCT GA
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Protein sequence | MQSRAVGSTR KRRIHHAPGR TDRRWSAPLR DPDADPISFC PVASPARQTA GSDDATPNSH PRDLVRPRMR GWLHTGAFPV SLALGVIAVA LATTLRARLG VAVYAISIAA LFGTSALYHR KMWSTSRARS LMKRLDHSMI FIFIAGTYTP FALIAMPEHT ARIVLAVVWG GAALGVLVRM LWLHSPRFLI VPLYIALGWV AVFVIPELMH QAGVAAMVLL LVGGACYSLG ALVYATRRPD PAPSTFGYHE VFHAFTLVAA GCHYIALMIA MLG
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