| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_0363 |
|---|
| Symbol | ispD |
|---|
| ID | 5668787 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 432452 |
|---|
| End bp | 433141 |
|---|
| Gene Length | 690 bp |
|---|
| Protein Length | 229 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641239295 |
|---|
| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| Protein accession | YP_001504735 |
|---|
| Protein GI | 158312227 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
|---|
| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.104783 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00214514 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGAGCACTC GGGTCGGGGC CCTCGTCCCG GCGGCGGGCC GAGGCGAGCG CCTCGGCGGT
GGCACGCCCA AGGCGCTGCG GCCGCTCGGG GGCCGTCCGA TGCTTTTGCG CGCGGTGGAG
ACGCTCCTGT CGTCCACGCT CGTCTCTCAG GTCGTCGTAG CGGCACCGCC GACTCTCGTC
GAGGTGGTGG GCCAGATCCT GGGCCCACGG GTGCGCGTCG TCCCCGGCGG AGCTGAGCGG
GTGGACTCGG TCCGCGCCGC GCTCGAGGCG TTGGACGACG ACATCGGCGT GGTCCTCGTG
CATGACGCGG CGCGGCCGCT CACGCCCGCC AAGCTGGTGG ACGCCGTCGC GACCACGGTG
CTCGACGGCC ATCCCGCCGT CATCCCCGTG TTGCCCGTGA CGGACACCGT CAAGGAGGTG
GACGCCGACG GCCGGGTGGT GCGGACCCCA CCCCGGGACG TCCTGCGCGC GGTGCAGACC
CCACAGGGCT TCCGGCGGGA CATCCTGCAC ACGGCCTACG CGAACCGGGA CCTCCCGGTC
ACCGACGACG CCGGCCTGGT GGAAGCTCTG GGGGTGCCGG TGACGACGAT CCCCGGCGCC
GAGGAGGCGT TCAAGGTGAC CCGACCAGCT GACCTGGTCC TCGCGGAGGC CCTGCTGGCC
CAGTTCGCAC CCGGCGACGG GCAGCGGTGA
|
|---|
| Protein sequence | MSTRVGALVP AAGRGERLGG GTPKALRPLG GRPMLLRAVE TLLSSTLVSQ VVVAAPPTLV
EVVGQILGPR VRVVPGGAER VDSVRAALEA LDDDIGVVLV HDAARPLTPA KLVDAVATTV
LDGHPAVIPV LPVTDTVKEV DADGRVVRTP PRDVLRAVQT PQGFRRDILH TAYANRDLPV
TDDAGLVEAL GVPVTTIPGA EEAFKVTRPA DLVLAEALLA QFAPGDGQR
|
|---|
| |