| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_0298 |
|---|
| Symbol | |
|---|
| ID | 5668722 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 350427 |
|---|
| End bp | 352688 |
|---|
| Gene Length | 2262 bp |
|---|
| Protein Length | 753 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641239228 |
|---|
| Product | ATP-dependent metalloprotease FtsH |
|---|
| Protein accession | YP_001504670 |
|---|
| Protein GI | 158312162 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0465] ATP-dependent Zn proteases |
|---|
| TIGRFAM ID | [TIGR01241] ATP-dependent metalloprotease FtsH |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.370393 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCCAA GAAGAATCTT CCGCGGCTGG GTACCTCTGC TGCTCCTGGT CCTCTTCGTG
ATCATCCTCA CGACGGGCGT GCTGTCCGGA CCGAGTGAGT ATCAGAAAGC AGACCTGAGC
TTCGTACAGC AGCAGATCGA CCAGAGCGCC GGAGCAAAAC CCGAGACCAG GGTCGTCGAT
GCGACGATCC AGGACTCCAA GCAGATCATC CGGATCGAGC TGGGGAACGG CAAGAAGTAC
GAGTCGTCCT TCGCCACCGA GCAGGCCCTG GTCCTCGCCA ACGAGCTCAA GCAGCAGAAC
ATCAAGTACA ACGTCTCCGT CGACCGCGGG AACGTCCTCG TCTCGCTGCT ACTCAACCTG
CTCCCCGTGC TGTTGATCGT GTTCCTGCTG CTGTTCTTCA TGAACCAGAT GCAGGGCGGC
GGCAACCGTG TCATGAACTT CGGCAAGTCC AAGGCGAAAC TGGTCAGCAA GGACACACCC
AAGACCACGT TCGCTGATGT CGCCGGCGCG GACGAGGCGA TCGAGGAGCT CCAGGAGATC
AAGGAGTTCC TCGAGAACCC GGGCAAGTTC CAGGCGATCG GCGCCAAGAT CCCCAAGGGC
GTCCTGCTCT ACGGGCCGCC CGGCACCGGC AAGACGCTGC TCGCCCGCGC CGTCGCAGGT
GAGGCCGGCG TCCCGTTCTA CTCGATCTCC GGCTCCGACT TCGTCGAGAT GTTCGTCGGC
GTCGGTGCGA GCCGGGTCCG CGACCTGTTC GAGCAGGCCA AGGCGAACGC GCCCGCGATC
ATCTTCGTGG ACGAGATCGA CGCCGTCGGC CGGCACCGCG GGGCGGGCCT GGGCGGTGGC
CACGACGAGC GCGAGCAGAC CCTCAACCAG CTCCTGGTCG AGATGGACGG GTTCGACGTG
AAGGGCGGCG TCATCCTGAT CGCCGCGACC AACCGACCCG ACATCCTCGA CCCGGCCCTG
CTGCGTCCCG GCCGGTTCGA CCGCCAGATC GTGGTCGACC GCCCCGACCT CCTCGGTCGC
GAGGCGATCC TGAAGGTCCA CGCCAAGGGC AAGCCGATCA GCTCGGACGT CGACATGCTG
ATCATCGCCC GGCGCACCCC CGGCTTCACC GGCGCGGACC TGGCGAACGT GCTCAACGAG
GCGGCGCTGC TCGCCGCGAG GTCGGACGTC CGGTTCATCT CGTCGGCGCT GCTCGAGGAG
TCGATCGACC GGGTCATGGC CGGGCCGGAG CGCAAGACCC GCGCGATGAG CGACCGGGAG
AAGAAGCGGA TCGCCTACCA CGAGGGCGGT CATGCCCTGG TGGCGCACGC GCTCCCCAAC
GCCGACCCGG TCCACAAGAT CACGATCCTG CCGCGTGGCC GGGCGCTCGG GTACACGATG
CAGCTCCCCC TGGAGGACAA GTACCTGTCG ACCAGGTCGG AGATGCTCGA CCGGCTCGCC
GTCCTCCTCG GCGGGCGCAC CGCGGAGGAG CTCGTCTTCC ACGAGCCGAC CACCGGGGCC
AGCGACGACA TCGAGAAGGC GACCCAGATC GCCCGCGCGA TGATCACCCA GTACGGCATG
AGCGACAAGC TCGGCGCGAT CAAGTTCGGC AGCGAGTCCG GTGAGGTCTT CCTCGGCCGC
GACATGGGTC ACCAACGCGA CTACTCCGAG GAGGTCGCGA GCGAGATCGA CGACGAGGTG
CGCCGGCTGA TCGAGGCCGC GCACGACGAG GCCTGGGAGA TCCTGGTCAC CTACCGGGAC
GTCCTCGACA ACCTCGTCCT GCGGTTGATG GACACCGAGA CCCTGAGCAA GGACGACGTG
CTCGAGGTCT TCGCCACCGT CCAGAAGCGC CCCAGCCGTG GTTCGTACAC CGGCGTGGGG
CGGCGCATCC CGTCGGACCG ACCGCCGGTG CAGACCCCGG CCGAGCTGGG TCTCGTCCCG
TCCAAGGTCT CTGACCTGGT GAAGGGCAAC AGTGGGCCGG CCGGCCATGC CACGAACGGC
GGCGGCACGA ACGGCGGTGG TTCGGCGAAC GGCGGTGGGG TGAGCGGTGG CAACGGCACC
GCGGGCCACC CCCGCCCGGC AGGCCAGGCC GACCCGGGCA CCGCCGGAGG TCCCGCGGGC
CTCGGGCACG GCGACCCCGC GCAGAGCGGG CCTGGACACA GCGCCTCGAG CCCGGCCCAC
GGCACACCCC CGCCGGGATC CCCGCCGCCG GAAGGCCCCC GGATCGCGAA CCCCTGGGCA
CCGCCCACCT GGGACAACGA TGACGACAGG AGACGCCGTT GA
|
|---|
| Protein sequence | MTPRRIFRGW VPLLLLVLFV IILTTGVLSG PSEYQKADLS FVQQQIDQSA GAKPETRVVD
ATIQDSKQII RIELGNGKKY ESSFATEQAL VLANELKQQN IKYNVSVDRG NVLVSLLLNL
LPVLLIVFLL LFFMNQMQGG GNRVMNFGKS KAKLVSKDTP KTTFADVAGA DEAIEELQEI
KEFLENPGKF QAIGAKIPKG VLLYGPPGTG KTLLARAVAG EAGVPFYSIS GSDFVEMFVG
VGASRVRDLF EQAKANAPAI IFVDEIDAVG RHRGAGLGGG HDEREQTLNQ LLVEMDGFDV
KGGVILIAAT NRPDILDPAL LRPGRFDRQI VVDRPDLLGR EAILKVHAKG KPISSDVDML
IIARRTPGFT GADLANVLNE AALLAARSDV RFISSALLEE SIDRVMAGPE RKTRAMSDRE
KKRIAYHEGG HALVAHALPN ADPVHKITIL PRGRALGYTM QLPLEDKYLS TRSEMLDRLA
VLLGGRTAEE LVFHEPTTGA SDDIEKATQI ARAMITQYGM SDKLGAIKFG SESGEVFLGR
DMGHQRDYSE EVASEIDDEV RRLIEAAHDE AWEILVTYRD VLDNLVLRLM DTETLSKDDV
LEVFATVQKR PSRGSYTGVG RRIPSDRPPV QTPAELGLVP SKVSDLVKGN SGPAGHATNG
GGTNGGGSAN GGGVSGGNGT AGHPRPAGQA DPGTAGGPAG LGHGDPAQSG PGHSASSPAH
GTPPPGSPPP EGPRIANPWA PPTWDNDDDR RRR
|
|---|
| |