Gene Franean1_0296 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_0296 
Symbol 
ID5668720 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp347677 
End bp349551 
Gene Length1875 bp 
Protein Length624 aa 
Translation table11 
GC content72% 
IMG OID641239226 
Productcyclic nucleotide-binding protein 
Protein accessionYP_001504668 
Protein GI158312160 
COG category[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
[COG2066] Glutaminase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.339618 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCGCGG GCGGGAACGC ACGGCCAGCC AAGGACTCCC GTCTACGAGC ACCGGACGCC 
GGTCCGATGG AGCGGATGCT TGCGGACATC CATGAGGCTT TCCGCACCGA CCGGTCGGGG
AAGGTCGCCA GCTTCATCCC CGAGCTCGCG ACCGCGGACC CGGCCCTGTT CGGCCTCGCC
GTCACGACGA TGGACGGGCT GCGCTACCGG GCGGGCGACA GCGACGTCCC GTTCACGATC
CAGTCGGTGT CGAAGCCGTT CGTTTACGCG CTGGCCCTGC GTGACCGCGG GACCGACGGT
GTGCTGGCCA GGGTCGGGGT CGAGCCGACC GGCGACGCCT TCAACGCGAT CACGCTCGAG
CCGGAGACCG GCCGTCCGCT GAACCCGATG GTGAATGCCG GGGCGCTGCT CACCTCCAGC
CTGGTGGGCG GCGGTGACGC GGCCGAGCGT TTCGACCGTG TCCTGACGGG TCTGTCGGCG
TTCGCGGGCA GGCAGCTGAC CGTGAATGAG CGGGTCTTCG CCTCCGAGCG GGACACCGGT
GATCGAAACC GTGCGATCGG CTACCTGATG CGTGGCGCGG GGGCGCTGCG GGGGCCGGTG
GACGAGATCT GTGAGGTCTA CTTCCGGCAG TGCGCCGTGG AGGTTACCGC GGCGGACCTC
GCGGTGATGG CCGGCACCCT CGCCCGCGGC GGGGTGAACC CGCTGACCGG CGAGCGCGTC
CTGAACGAGG AGCACGTCAA CCATGTGCTG ACCGTCATGG CGACCTGCGG CATGTACGAC
CGGGCGGGAA CCTGGCTGTT CCGGGTGGGC CTGCCCGCGA AGAGCGGGGT CGCCGGAGGA
GTGTGCGCGG TGCTGCCCGG GCAGCTCGGG ATCGGCGTCT TCAGCCCGCC GCTCGACGAG
GTGGGCAACA GCGTCCGCGG CGTGCGCGCC TGCGAGCGGC TGGCCTCCCG GTTCGCACTG
CATCTCCTTG CCCCGCAGGG AGAACCGCCG CACCCGGTGC GGGGCACGCA CCGTGGCGAC
GCGCTGAGCT CGAAGCGGAT GCGAGGCGCG CGGGAACGGG CCGTCCTCGC CGTACGGGGT
TCCGCGATCG TCATCCACGA GCTGCAGGGC GATCTGGTGT TCGCCAGCGC GGAGCGGGTT
GTGCGCACCG TCCGCCAGCA CCTGGACGAC GTCCGCTGGG TGGTGCTCGA CCTGCGCCGG
GTGGCCGCCG TCCGGGAGCC CGCCCTCGAG CTCCTGCGGG TGCTGCTCGA CGAGCTGGCC
AGCCGGGACG TCAACGTCCT GTTCGCCGAC CCGCGTGGGC TTCCGGGCGT CGACCGCCTG
ATGCGGGGGG ACTGGAGCAC GCAGCGCGTT CCCGATCTGG AGACCGCACT CGAATGGGCG
GAGGAGGCGC TGCTGATGCG CGAGGACCTC GCGACCCTCC CGCCGACCGC GCACGTCCCG
CTCGGCGCGC AGGAACTGCT CACCGATCTC GGCAAGGAGG GCACCCGGGT CATCGGCGCG
ATGTGCGAAC GACGCACCTA CGAACGCGGC GCGACGGTCT TCGACGAGGG AGATCCGGCG
GACGCGCTCT ACTTCGTCAC CAGGGGCCTG GCGAACGCGC AGGCGCCGAA CGCGGACGGG
ACGCGCTGGT TCCGGCTCAG CTCGGTTCCA GCCGGCAGTG CGTTCGGTGA GCTGGCACTC
GTCGATGGCG GCCGGCGTTC CACCCGGATC GTCGTCGCGG AGACCATGAC CTGCGAGGTG
CTCTCGGTCG CGGCGTTCGA CACCCTGGTG CGGGAGCATC CGGACGTCTA CAACGCGCTG
GTGCGCGCGA TCGCGCGCAG CCTCTCGGCA CAGCTGCGCC GAGCGACCCG GGAGATCCAG
TCGCTCGAAG AGTGA
 
Protein sequence
MRAGGNARPA KDSRLRAPDA GPMERMLADI HEAFRTDRSG KVASFIPELA TADPALFGLA 
VTTMDGLRYR AGDSDVPFTI QSVSKPFVYA LALRDRGTDG VLARVGVEPT GDAFNAITLE
PETGRPLNPM VNAGALLTSS LVGGGDAAER FDRVLTGLSA FAGRQLTVNE RVFASERDTG
DRNRAIGYLM RGAGALRGPV DEICEVYFRQ CAVEVTAADL AVMAGTLARG GVNPLTGERV
LNEEHVNHVL TVMATCGMYD RAGTWLFRVG LPAKSGVAGG VCAVLPGQLG IGVFSPPLDE
VGNSVRGVRA CERLASRFAL HLLAPQGEPP HPVRGTHRGD ALSSKRMRGA RERAVLAVRG
SAIVIHELQG DLVFASAERV VRTVRQHLDD VRWVVLDLRR VAAVREPALE LLRVLLDELA
SRDVNVLFAD PRGLPGVDRL MRGDWSTQRV PDLETALEWA EEALLMREDL ATLPPTAHVP
LGAQELLTDL GKEGTRVIGA MCERRTYERG ATVFDEGDPA DALYFVTRGL ANAQAPNADG
TRWFRLSSVP AGSAFGELAL VDGGRRSTRI VVAETMTCEV LSVAAFDTLV REHPDVYNAL
VRAIARSLSA QLRRATREIQ SLEE