| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_0022 |
|---|
| Symbol | |
|---|
| ID | 5668449 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 26953 |
|---|
| End bp | 28206 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641238951 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001504397 |
|---|
| Protein GI | 158311889 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.68503 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCAGCA ATGACCGGCA GGGAATTCCC GCGGCACCGG GGGCGTCGCA CGGGGCGGTT
CCCGACCCGG CGCTGCTGCG CGGCCTGACC AGACGTCGTT TCGACCGACG GGACCTCCTG
CGCCTCACCA GGGCGGCCGG TAGCGCCGCG CTCCTGGCCG CCTGTGGGGT CAAGGGCGAG
GCCGGTGATT CGGCGCAGGC CGCCGACGTC GCCGGCTACT GGGCGGGCAA GGCGAAGGCG
GGAACGCTCG ACTTCGCGAA CTGGCCGCTC TACATGGATG TCGGTAGCAC CGACGCGGAG
CGTCCCTCGC TCGACCTGTT CACCCAGGAG ACGGGCATCA AGGTCACCTA CCGCGAGGTG
ATCCAGGAGA ACGAGTCCTT CTTCGCCCAG ATCCGGCCCA GCCTCGCCGA GAACCAGCCT
ATCGGGTACG ACCTGATGGT TCTGACCAAC GGCATCACCC TCAGCCGGGT CATCCAGCTC
GGTTACCTCG CCCCGCTCGA CCACAAGAGG CTGCCCACCT TCGCCGCCAA CGCCGACCCG
AGCGTCAAGG ATCCCGCGTA CGACCCGGGA AACCAGTTCA CCGTGGCCTG GCAGTCCGGT
ATCACCGGCA TCGCCTACGA CCCGGAGAAG ACCGGCCGGG AGATCACCAG TTTCGCCGAC
CTCATGGACC CCGCCTTCGC CGGCAAGGTC GGGATGTTCG GTGAGAACCA GGAGCTGCCG
AACCTGGCGC TACTCGGCAT CGGCGTCGCC CCGGCCGACT CCGCTCCGGA GGACTGGCGG
CGCGCGGCCG ACAAACTGAT CGAGCAGCGC GACGCCGGAA TCGTCCGCAA GTACTACGAC
CAGAGCTACA TCGACTCACT CGCCGGCGGC GACCTGTGGA TCTCGATGGC GTGGTCGGGG
GACGTCTACC AGCAGCTCGC GGCCGGGACG AAGCTGAAGT TCGTGGTGCC GGAGGAAGGC
GGCCTGATCT GGACCGACAG CATGTGCATC CCGAGGACCG CCGCGCACCC GGTGGACGCC
CTCACCTACA TGGACTTCGT GTACCGGCCC GACATCGCCG GGATGCTGGC CGAGTACATC
AACTACATAA CGCCGGTGCC GGCCGCCCGT GACCACGTCT CCCCCGAGCT GGCCGAATCC
ACGCTGCTGT TCCCGACCCG CGCGGAGTTC GACCGTGTGC ACCGCTTCCG GGTGCTGACG
ACGGAGGAGG AGACCGAGTG GAACAAGATC TTCCAGCCGG TCTACCAGTC CTAG
|
|---|
| Protein sequence | MTSNDRQGIP AAPGASHGAV PDPALLRGLT RRRFDRRDLL RLTRAAGSAA LLAACGVKGE
AGDSAQAADV AGYWAGKAKA GTLDFANWPL YMDVGSTDAE RPSLDLFTQE TGIKVTYREV
IQENESFFAQ IRPSLAENQP IGYDLMVLTN GITLSRVIQL GYLAPLDHKR LPTFAANADP
SVKDPAYDPG NQFTVAWQSG ITGIAYDPEK TGREITSFAD LMDPAFAGKV GMFGENQELP
NLALLGIGVA PADSAPEDWR RAADKLIEQR DAGIVRKYYD QSYIDSLAGG DLWISMAWSG
DVYQQLAAGT KLKFVVPEEG GLIWTDSMCI PRTAAHPVDA LTYMDFVYRP DIAGMLAEYI
NYITPVPAAR DHVSPELAES TLLFPTRAEF DRVHRFRVLT TEEETEWNKI FQPVYQS
|
|---|
| |