| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_0015 |
|---|
| Symbol | |
|---|
| ID | 5668442 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 20881 |
|---|
| End bp | 21498 |
|---|
| Gene Length | 618 bp |
|---|
| Protein Length | 205 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641238944 |
|---|
| Product | endopeptidase Clp |
|---|
| Protein accession | YP_001504390 |
|---|
| Protein GI | 158311882 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0740] Protease subunit of ATP-dependent Clp proteases |
|---|
| TIGRFAM ID | [TIGR00493] ATP-dependent Clp protease, proteolytic subunit ClpP |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.632715 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCCGGGT ACCTGCTCCC GGTCGACGTC GCCGCGGTCC GCCGGCCCAC GGGGCGCGGT
CTCGCCGGAG GTGGCCTCGT CGAGGGCCTC AAGGCGGGAT TCGTCGGCGC CGCCGTCGAC
GACGCCCTCG CGAACCGGGT GTGCGCGCAG CTCCTGCTGC TCGCCCAGGC CAGCAGGCGC
CAGGACATCT CGCTGTACAT CAACTCGCCG GGCGGCTCGG TCGACGCGGG AATGGCGATC
TACGACACGA TGCAGTTCAT CGAGAACGAC GTCGCGACCT ACGCGCTCGG GCTGGCGGCC
TCGATGGGCC AGTTCCTGCT CACCGCGGGC ACCGCCGGCA AGCGGTTCGC GCTGCCGAAC
TCGCGGATCA TGATGCACCA GCCACACGGC GGCGTCGGCG GCACGGCGTC CGACATCGCC
ATCCAGGCCG AGCAGGCGCT GCACACCCGC CGCCGGATGC AGGAGCTGAT CGCCGAGCAC
AGCGGTCACT CCGTGGCGGA GATCGCCGCC GACTCGGACC GCGACCGCTG GTTCACCGCG
GCGGCGGCGA AGGAGTACGG GCTCGTCGAT GCCGTCGTGG AGCACGTCCG GCGCGTGCCC
GCCGGCTTCA CCCGCTGA
|
|---|
| Protein sequence | MPGYLLPVDV AAVRRPTGRG LAGGGLVEGL KAGFVGAAVD DALANRVCAQ LLLLAQASRR
QDISLYINSP GGSVDAGMAI YDTMQFIEND VATYALGLAA SMGQFLLTAG TAGKRFALPN
SRIMMHQPHG GVGGTASDIA IQAEQALHTR RRMQELIAEH SGHSVAEIAA DSDRDRWFTA
AAAKEYGLVD AVVEHVRRVP AGFTR
|
|---|
| |