| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_0006 |
|---|
| Symbol | gyrB |
|---|
| ID | 5668433 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 7555 |
|---|
| End bp | 9513 |
|---|
| Gene Length | 1959 bp |
|---|
| Protein Length | 652 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641238934 |
|---|
| Product | DNA gyrase subunit B |
|---|
| Protein accession | YP_001504381 |
|---|
| Protein GI | 158311873 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
|---|
| TIGRFAM ID | [TIGR01059] DNA gyrase, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCCTACG ACGCTAGTTC GATCAAGGTT CTCGAGGGTC TCGAAGCGGT ACGCAAGCGC
CCCGGCATGT ACATCGGCTC CACCGGGGAG CGGGGCCTGC ACCACCTGGT CTACGAGGTC
GTGGACAACG CGGTGGACGA GGCGCTCGCG GGCTACTGCG ACACGATCAG CGTGACCCTG
CTGGCCGACG GCGGCGTACG CGTCACGGAC AACGGCCGCG GGATCCCGGT CGGCGAACAC
CCCGTCAAGA AGATCCCGAC CGTCGAGCTG GTGCTCACCA CGCTGCACGC CGGCGGCAAG
TTCGACGGCG AGTCGTACGC GGTCTCCGGT GGTCTGCACG GCGTCGGCGT GAGCGTCGTG
AACGCGCTGT CGACCCGACT CGACGTCGAG ATCCAGACCG ACGGGCACAG CTGGTTCCAG
CCCTACGAGA ACTCCCGTCC GGCGCGGCCG CTGGCGCAGA CCGGCACGTC GAAGAAGACC
GGTACGACCA TCACGTTCTG GGCCGACCCC ACGATTTTCG AGACCACCAC GTACAAGTAC
GAGACGCTCT TCCGTCGCCT CCAGGAGATG GCGTTCCTGA ACAAGGGCCT GTCGATCACC
CTGCGGGACG AGCGCGGCAA GGCCACGGAG ACGGAGGAGG CGGCCGAGCC GACCGAGGTC
ACGTTCAAGT ACGACAACGG CCTGGTCGAC TTCGTCGGTC ACCTCAACGC GACCAAGGAC
GCCGTCCACC GCAGCGTCAT CTCGCTGGAG TCCAAGGGCA CCGGCATCGA GGCCGAGCTC
GCGATGCAGT GGAACTCCGG CTACAACGAG TCGGTCTACA CCTTCGCGAA CACGATTAAC
ACGCACGAGG GCGGAACCCA CGAAGAGGGC TTCCGGGCCG CCCTCACCAG CGCGGTCAAC
GCCTACGCGA AGGACCAGAA CCTCCTCAAG CCGGTCAAGG CCGGCTCGAA GAACTCCGAC
GAGCGGCTCT CCGGCGACGA CATCCGGGAG GGCCTCACCG CGATCATCTC GGTGAAGCTC
GCGCAGCCGC AGTTCGAGGG CCAGACCAAG ACGAAGCTCG GCAACACCGA GGCCAAGAAG
TTCGTCCAGG AGATGTGCTA CTCGGCGCTC AAGGACTGGT TCGAGGTCAA CCGCACCGAG
GCCCGCTCGA TCGTCAGCAA GGCGCTCGAC GCGCAGCGCG CCCGCATCGC CGCCCGCCAG
GCCCGTGACC TCACCCGGCG CAAGGGCCTG CTCGGCGGGA CGGGCCTGCC CGGCAAGCTC
GCCGACTGCC AGTTCACCGA CCCCGAGCGG TGCGAGCTGT ACATCGTCGA GGGTGACTCG
GCCGGCGGCT CGGCCAAGGG CGGTCGTGAC TCGAAGTTCC AGGCGATCCT GCCGCTACGC
GGGAAGATCC TGAACGTGGA GAAGGCCCGC ATCGACCGGG TCCTGAAGAA CACCGAGGTC
CAGGCGCTCA TCCAGGCGTT GGGCTGCGGT ATCCACGACG ACTTCGACAT CGCCAAGCTG
CGCTATCACA AGATCGTGCT GATGGCGGAC GCCGACGTCG ACGGCCAGCA CATCCGCACC
CTGCTGCTCA CCCTGCTGTT CCGGTTCATG CGCCCGCTCG TCGAGGCCGG GCACGTCTTC
CTCGCGCAGC CCCCGCTCTA CAAGATCAAG TGGGGTCGTG AGGACTGGGA GTACGCCTAC
TCCGACCGGG AGCGCGACGG CCTGCTCGAA CAGGGCGTCG AGGCCGGCCG CAAACTGCCC
AAGGACGCGA TCCAGCGATT CAAGGGTCTC GGCGAGATGA ACGCCACCGA GCTCTGGGAC
ACCACCATGG ACCCGGACAA GCGGATCCTG CTCCAGGTGA CGCTCGACGA CGCCGCCGTC
GCCGACGAAC TGTTCTCGGT CCTGATGGGC GAGGACGTCG ACGCGCGGCG CAGCTTCATC
CAGCGCAACG CGAAGGATGT GCGTTTCCTG GACATCTGA
|
|---|
| Protein sequence | MAYDASSIKV LEGLEAVRKR PGMYIGSTGE RGLHHLVYEV VDNAVDEALA GYCDTISVTL
LADGGVRVTD NGRGIPVGEH PVKKIPTVEL VLTTLHAGGK FDGESYAVSG GLHGVGVSVV
NALSTRLDVE IQTDGHSWFQ PYENSRPARP LAQTGTSKKT GTTITFWADP TIFETTTYKY
ETLFRRLQEM AFLNKGLSIT LRDERGKATE TEEAAEPTEV TFKYDNGLVD FVGHLNATKD
AVHRSVISLE SKGTGIEAEL AMQWNSGYNE SVYTFANTIN THEGGTHEEG FRAALTSAVN
AYAKDQNLLK PVKAGSKNSD ERLSGDDIRE GLTAIISVKL AQPQFEGQTK TKLGNTEAKK
FVQEMCYSAL KDWFEVNRTE ARSIVSKALD AQRARIAARQ ARDLTRRKGL LGGTGLPGKL
ADCQFTDPER CELYIVEGDS AGGSAKGGRD SKFQAILPLR GKILNVEKAR IDRVLKNTEV
QALIQALGCG IHDDFDIAKL RYHKIVLMAD ADVDGQHIRT LLLTLLFRFM RPLVEAGHVF
LAQPPLYKIK WGREDWEYAY SDRERDGLLE QGVEAGRKLP KDAIQRFKGL GEMNATELWD
TTMDPDKRIL LQVTLDDAAV ADELFSVLMG EDVDARRSFI QRNAKDVRFL DI
|
|---|
| |