Gene Franean1_0003 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_0003 
Symbol 
ID5668430 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp3956 
End bp5116 
Gene Length1161 bp 
Protein Length386 aa 
Translation table11 
GC content72% 
IMG OID641238931 
ProductDNA polymerase III, beta subunit 
Protein accessionYP_001504378 
Protein GI158311870 
COG category[L] Replication, recombination and repair 
COG ID[COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) 
TIGRFAM ID[TIGR00663] DNA polymerase III, beta subunit 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.301808 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGGTTCC GCGTGGAACG GGACGAATTC ACCGACGCGG TGGCCTGGAC GGCCCGCACC 
CTGCCGAGCC GGGCGACCAC GCAGTTGCAG GTCCTGGCCG GCCTGCTGCT CGACGCCACC
GGTCCGGCGC TCAAGGTCGC CGCGTTCGAC TACGAGGTCG CCGCGCAGGG TGAGCTGGAC
GCCACCGTCA CCGAAGAGGG CCGGGGCCTG GTCAACGGCA AGATGCTCGC GGACATCACC
CGCTCCCTGC CCGCGGCGCC GGTCGACGTC CACGTTGACG GCACCCGCCT CGTCGTCGCC
TGCGGCAACG CCCGGTTCGC ACTACCGATG CTGCCCGTCG ACGACTACCC GACCCTGCCG
CCGATGCCGG AGATCACCGG GCACATCGAG GGCGCCGCGT TCGGCAGTGC CGTCGCGCAG
GTCGCCGTAG CCGCGGGCCG TGACGACACC CTGCCGGTCC TCACCGGCGT GCGTCTCGAG
ATCGACGGCG ACACGCTCAC CCTCGCCGCT ACCGACCGTT ACCGCCTCGC CGTGCGCACG
CTCAAGTGGC GCCCTGCGAC CCCCGATGCG TCCGGCGTCG CGCTCGTCCC GGCCCGCACC
CTGCTCGACA CGGCGAAGAG CCTGTCCGGC TCGGGCGTCG AGGTCGCCGT CGCGCTCGGC
ACCGGTCCCT CCGGGGAGAC GCTCGCCGGT TTCGCCGGCA ACACCCGCCA GACCACCACG
CGTCTGCTCG AGGGCACCTT CCCGCCCTAC CGCAAGTTGC TGCCCGACAG CTCACCGCTG
ATCGCCCAGC TCGAGATAGC TCCCCTCACC GAGGCGGTCA AGCGCGTCGC GCTCGTCGCG
GCCCGCACCG CCCCGGTGCA GCTGACGTTC ACCCCCGACC ACCTCGTCCT CGAGGCAGGT
ACCGGCGGCG AGGCCCAGGC GTCCGAGACT CTGCCCGTCA CCTATGACGG GCCTGAGCTC
ACGGTCGCCT TCAACCCCGC CTACCTGCTC GACGCCCTCG GCGCGCTCGA GTCCGACATC
GTCCGGATCG GGTTCGCCAG CGCCGAGGAC GCCGCGCTTG CCGCGAGCAA GCCCGCGATC
CTCACCGGCA AGGGCGGCGA CGACCAGACC GAGATCCCCG ACTACCGCTA CCTGCTGATG
CCGATCCGAC TCAACGGGTG A
 
Protein sequence
MRFRVERDEF TDAVAWTART LPSRATTQLQ VLAGLLLDAT GPALKVAAFD YEVAAQGELD 
ATVTEEGRGL VNGKMLADIT RSLPAAPVDV HVDGTRLVVA CGNARFALPM LPVDDYPTLP
PMPEITGHIE GAAFGSAVAQ VAVAAGRDDT LPVLTGVRLE IDGDTLTLAA TDRYRLAVRT
LKWRPATPDA SGVALVPART LLDTAKSLSG SGVEVAVALG TGPSGETLAG FAGNTRQTTT
RLLEGTFPPY RKLLPDSSPL IAQLEIAPLT EAVKRVALVA ARTAPVQLTF TPDHLVLEAG
TGGEAQASET LPVTYDGPEL TVAFNPAYLL DALGALESDI VRIGFASAED AALAASKPAI
LTGKGGDDQT EIPDYRYLLM PIRLNG