Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_0003 |
Symbol | |
ID | 5668430 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | + |
Start bp | 3956 |
End bp | 5116 |
Gene Length | 1161 bp |
Protein Length | 386 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641238931 |
Product | DNA polymerase III, beta subunit |
Protein accession | YP_001504378 |
Protein GI | 158311870 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
TIGRFAM ID | [TIGR00663] DNA polymerase III, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.301808 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGGTTCC GCGTGGAACG GGACGAATTC ACCGACGCGG TGGCCTGGAC GGCCCGCACC CTGCCGAGCC GGGCGACCAC GCAGTTGCAG GTCCTGGCCG GCCTGCTGCT CGACGCCACC GGTCCGGCGC TCAAGGTCGC CGCGTTCGAC TACGAGGTCG CCGCGCAGGG TGAGCTGGAC GCCACCGTCA CCGAAGAGGG CCGGGGCCTG GTCAACGGCA AGATGCTCGC GGACATCACC CGCTCCCTGC CCGCGGCGCC GGTCGACGTC CACGTTGACG GCACCCGCCT CGTCGTCGCC TGCGGCAACG CCCGGTTCGC ACTACCGATG CTGCCCGTCG ACGACTACCC GACCCTGCCG CCGATGCCGG AGATCACCGG GCACATCGAG GGCGCCGCGT TCGGCAGTGC CGTCGCGCAG GTCGCCGTAG CCGCGGGCCG TGACGACACC CTGCCGGTCC TCACCGGCGT GCGTCTCGAG ATCGACGGCG ACACGCTCAC CCTCGCCGCT ACCGACCGTT ACCGCCTCGC CGTGCGCACG CTCAAGTGGC GCCCTGCGAC CCCCGATGCG TCCGGCGTCG CGCTCGTCCC GGCCCGCACC CTGCTCGACA CGGCGAAGAG CCTGTCCGGC TCGGGCGTCG AGGTCGCCGT CGCGCTCGGC ACCGGTCCCT CCGGGGAGAC GCTCGCCGGT TTCGCCGGCA ACACCCGCCA GACCACCACG CGTCTGCTCG AGGGCACCTT CCCGCCCTAC CGCAAGTTGC TGCCCGACAG CTCACCGCTG ATCGCCCAGC TCGAGATAGC TCCCCTCACC GAGGCGGTCA AGCGCGTCGC GCTCGTCGCG GCCCGCACCG CCCCGGTGCA GCTGACGTTC ACCCCCGACC ACCTCGTCCT CGAGGCAGGT ACCGGCGGCG AGGCCCAGGC GTCCGAGACT CTGCCCGTCA CCTATGACGG GCCTGAGCTC ACGGTCGCCT TCAACCCCGC CTACCTGCTC GACGCCCTCG GCGCGCTCGA GTCCGACATC GTCCGGATCG GGTTCGCCAG CGCCGAGGAC GCCGCGCTTG CCGCGAGCAA GCCCGCGATC CTCACCGGCA AGGGCGGCGA CGACCAGACC GAGATCCCCG ACTACCGCTA CCTGCTGATG CCGATCCGAC TCAACGGGTG A
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Protein sequence | MRFRVERDEF TDAVAWTART LPSRATTQLQ VLAGLLLDAT GPALKVAAFD YEVAAQGELD ATVTEEGRGL VNGKMLADIT RSLPAAPVDV HVDGTRLVVA CGNARFALPM LPVDDYPTLP PMPEITGHIE GAAFGSAVAQ VAVAAGRDDT LPVLTGVRLE IDGDTLTLAA TDRYRLAVRT LKWRPATPDA SGVALVPART LLDTAKSLSG SGVEVAVALG TGPSGETLAG FAGNTRQTTT RLLEGTFPPY RKLLPDSSPL IAQLEIAPLT EAVKRVALVA ARTAPVQLTF TPDHLVLEAG TGGEAQASET LPVTYDGPEL TVAFNPAYLL DALGALESDI VRIGFASAED AALAASKPAI LTGKGGDDQT EIPDYRYLLM PIRLNG
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