| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_4256 |
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| Symbol | trmE |
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| ID | 5664640 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 5170510 |
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| End bp | 5171871 |
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| Gene Length | 1362 bp |
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| Protein Length | 453 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641238924 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_001504101 |
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| Protein GI | 157964067 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.257081 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACTACAG ATACTATCGT GGCACAAGCG ACCGCTCCTG GGCGTGGTGG CGTGGGTATT
ATTCGCGTAT CTGGCGACTT AGCGACTAAT GTTGCTATAG CCGTTTTAGG ACATATCCCT
AAAACCCGTT ACGCCGATTA CTGTGATTTT AAAGATGAGG CTGGTGAAGT CATCGACCAA
GGTATCGCCT TGTTCTTTAA AGGCCCAAAC TCCTTTACCG GTGAAGACGT TCTGGAACTG
CAAGGCCACG GCGGTCAAAT AGTTCTCGAT ATGCTGATTA AGCGCGTCAT GGAAGTCGAT
GGGCTGCGTA TCGCAAAACC GGGTGAATTC AGCGAACAGG CTTTCATGAA TGATAAGCTT
GACCTGACTC AAGCCGAAGC GATTGCCGAC CTAATTGATG CCACAAGTGA ACAAGCTGCC
AAAAGCGCTC TCAACTCACT TCAGGGCGAA TTCTCTACTC AGATACATGA TCTGGTCGAA
AAGGTCACAA ACTTGCGCTT ATACGTCGAG GCGGCAATTG ATTTCCCTGA TGAAGAGGTC
GATTTCCTGT CCGACGGTAA AATAGCCGCC TCCTTGAATG GGATTGTTGG CAAACTCGAT
GGGGTTCAAG CTAGCGCTAA ACAGGGCTCT ATTATTCGTG AAGGCATGAA AGTAGTGATT
GCAGGTCGTC CAAATGCGGG TAAATCAAGC CTACTTAACG CCTTGGCTGG CAAAGAGTCA
GCTATTGTGA CCGAAATAGC TGGCACCACT CGCGATGTAT TACGTGAACA TATCCATTTA
GATGGTATGC CATTACACAT TATTGATACC GCAGGTTTAC GTGACACCGT CGATACCGTA
GAGAAAATTG GTATCGAGCG CGCTTGGGAT GAGATAAAAA CAGCCGATCG CGTACTGTTT
ATGGTCGATG GCACCACAAC TGCAGCCATC GATCCTCATG AAATCTGGCC AGACTTTATC
GATCGTCTCC CTAGTAACTT AGGCGTTACC GTGGTACGTA ACAAAGCCGA TCTAACCGGT
GAAGATCTTT CCGTGACTCA AGAAGCGGGA CATAGCGTGT ATCGTATCTC AGCCAAAACA
GGCCTAGGTG TCGAAGACCT GAAGCAACAT CTAAAATCAT TAATGGGTTA CCAGAGTAAT
CTAGAGGGCG GCTTTATTGC TCGACGTCGT CACTTAGAGG CACTAGATCT AGCTAGCAGT
CACTTGATGC TAGGTAAAGA GCAATTGGAA GTGTATCAAG CTGGTGAACT GCTCGCCGAA
GAACTACGCA TGTGTCAGAT GGCACTATCT GAGATCACAG GTAAGTTCAC TTCAGATGAT
CTTCTCGGCA AGATCTTTAG TTCATTCTGT ATTGGCAAGT AA
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| Protein sequence | MTTDTIVAQA TAPGRGGVGI IRVSGDLATN VAIAVLGHIP KTRYADYCDF KDEAGEVIDQ
GIALFFKGPN SFTGEDVLEL QGHGGQIVLD MLIKRVMEVD GLRIAKPGEF SEQAFMNDKL
DLTQAEAIAD LIDATSEQAA KSALNSLQGE FSTQIHDLVE KVTNLRLYVE AAIDFPDEEV
DFLSDGKIAA SLNGIVGKLD GVQASAKQGS IIREGMKVVI AGRPNAGKSS LLNALAGKES
AIVTEIAGTT RDVLREHIHL DGMPLHIIDT AGLRDTVDTV EKIGIERAWD EIKTADRVLF
MVDGTTTAAI DPHEIWPDFI DRLPSNLGVT VVRNKADLTG EDLSVTQEAG HSVYRISAKT
GLGVEDLKQH LKSLMGYQSN LEGGFIARRR HLEALDLASS HLMLGKEQLE VYQAGELLAE
ELRMCQMALS EITGKFTSDD LLGKIFSSFC IGK
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