| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_4108 |
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| Symbol | |
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| ID | 5664492 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 4995189 |
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| End bp | 4995878 |
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| Gene Length | 690 bp |
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| Protein Length | 229 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 641238772 |
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| Product | pseudouridine synthase Rlu family protein |
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| Protein accession | YP_001503953 |
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| Protein GI | 157963919 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR01621] pseudouridine synthase Rlu family protein, TIGR01621 |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTATCGAG TCATTGCCGA TGAGCGCGAC TTTATTGTAA TTAATAAGTC CGCCGAAGTG
CATTTTCATA GCCAAGATGG CAACGCCGGC GTCGTGGCTC AAGCCGAAGC CGATCTCGGT
ATCAAGCTCT ACGCCGTGCA CAGGCTAGAT ACCATGACGT CTGGGCTGAT TATCTTAGCT
AAGTCTAGCA GTGCTGCCGC CGAGTTTACC CGCATGTTTT CGGCTCATTT AGTGCAGAAA
TACTACCTTG CCTTGGCTAA GGGAAAGCCG AAGAAGAAGC AGGGCTGGGT GATTGGCGAT
ATGGCCAAGT CTCGCCGCAG TATGCATAAA TTGCTTCGCA CTACCGAAAA TCCCGCCATT
ACGCAGTTTT TCTCTCACTC TATCGCAGAG GGGGAGCGCT TGTACCTACT CAAACCTCAT
AGCGGTAAGA CTCATCAACT GAGAGTGGCA TTGGCCAGCA TCGGCGTGCC TATTTTAGGC
GATACCTTGT ACGGTGGTTT GAGTGCCGAT AGAGGCTATC TGCATGCCTA TAGTTTGCAT
TTTGATTACC TGGGCCAAGA GTACGAATTT ACCGTTGCGC CAAGTATCGG CCAACACTTT
CAAGATATTG CTGTAAGCCA ACAACTTGCA GTTTGGCAAC AGCCCCATCA AATACTCTGG
CCTAAGCTGA AAAAGGCCAG TACGAGTTAG
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| Protein sequence | MYRVIADERD FIVINKSAEV HFHSQDGNAG VVAQAEADLG IKLYAVHRLD TMTSGLIILA
KSSSAAAEFT RMFSAHLVQK YYLALAKGKP KKKQGWVIGD MAKSRRSMHK LLRTTENPAI
TQFFSHSIAE GERLYLLKPH SGKTHQLRVA LASIGVPILG DTLYGGLSAD RGYLHAYSLH
FDYLGQEYEF TVAPSIGQHF QDIAVSQQLA VWQQPHQILW PKLKKASTS
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