Gene Spea_4061 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_4061 
Symbol 
ID5664445 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand
Start bp4937252 
End bp4938403 
Gene Length1152 bp 
Protein Length383 aa 
Translation table11 
GC content46% 
IMG OID641238725 
ProductRND family efflux transporter MFP subunit 
Protein accessionYP_001503906 
Protein GI157963872 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value2.65031e-09 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGGCAAA TAGTGAAAAT TGCCTCTGTT TTAAGTGTGG CGTTATGGAT AACTGGCTGT 
GAGCCAAAAC CTGAGCAGGG GCCACAACAA CGTGGACCTA TGGAAGTTGG CGCTATAACA
GTTACAGCCC AACCTCAATC GATTATGGTT GAACTACCAG GTCGTAGTAA GGCATATCTA
GAAGCTGAAG TACGTCCACA GGTGAGCGGT ATCATTATGA CCCGCGGCTT TACTGAAGGT
AGAGATGTTG AGCAAGGTCA GTCTTTATAC CAGATCGAAC CTTCTACTTA CGAAGCTGCA
CTAGTTAGTG CGAAAGCTGA TCTTACCAGC GCTGAAGCGG CATTGGTTTC GGCTAAAGCT
AAAGCGTTAC GCTTTGCGAA ACTAATCAAG CTGAACTCTA TTAGTCAACA AGACTTCGAT
GAAGCTGATG CGGCTTATAA AGAGGCTATG GCACGTGTAA CCGTAGCAAA AGCTGCGATT
AACACAGCGT CGATCAACCT TGAATATACT AAGGTAACAG CACCAATTTC TGGCCGTATC
GGTAAGTCTG ATGTGACACC GGGTGCACTT GTTACAGCTA ATCAAAGCCA AACATTAGCG
ACAATTCAGC AGTTAGATCC AATCAATATC GATATCGCCC AGTCGAGCGC GCAAATGTTG
CGTCTTAAGT CTCAACTTAA GCGTGGTCAA ATTGAAGCCG CTGCAAATGC GAATGTAGAG
CTAATCCTTG AAGATGGCAC TCCATATAGT CATACAGGCG TGCTGCAGTT TGCTGAAGTT
ACCGTTAATG AAAACACGGG TTCTGTGATT ATTCGTGCCG AATTCCCTAA TCCGGAAGGC
GTGTTAATGC CGGGCATGTA TGTGCGTGCT GTGCTTAATA CTGGTACCGA TCCGGCTGCG
ATTCTAGTAC CACAAAAAGC CATTACTCGT AACACCAAAG GTGAAGCGGT AGCTATGGTT
ATTGATGATG GCAAAGTGGC TGCACGTATT GTGACAACTG CTGAAGTGAT TGATAACCAA
TGGCGTATTC TTGATGGTTT GAAAGTGGGC GATCAACTAA TCGTTGAAGG TCTACAAAAA
ATTCGTCCAG GCGCCCCAGT AAAGGCGGGT CCTTTGGTCT CTGACAAGAA ACCAGAAACA
CAACAGAAAT AG
 
Protein sequence
MRQIVKIASV LSVALWITGC EPKPEQGPQQ RGPMEVGAIT VTAQPQSIMV ELPGRSKAYL 
EAEVRPQVSG IIMTRGFTEG RDVEQGQSLY QIEPSTYEAA LVSAKADLTS AEAALVSAKA
KALRFAKLIK LNSISQQDFD EADAAYKEAM ARVTVAKAAI NTASINLEYT KVTAPISGRI
GKSDVTPGAL VTANQSQTLA TIQQLDPINI DIAQSSAQML RLKSQLKRGQ IEAAANANVE
LILEDGTPYS HTGVLQFAEV TVNENTGSVI IRAEFPNPEG VLMPGMYVRA VLNTGTDPAA
ILVPQKAITR NTKGEAVAMV IDDGKVAARI VTTAEVIDNQ WRILDGLKVG DQLIVEGLQK
IRPGAPVKAG PLVSDKKPET QQK