| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_4038 |
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| Symbol | |
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| ID | 5664422 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 4903734 |
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| End bp | 4905293 |
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| Gene Length | 1560 bp |
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| Protein Length | 519 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641238702 |
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| Product | L-carnitine/gamma-butyrobetaine antiporter |
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| Protein accession | YP_001503883 |
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| Protein GI | 157963849 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGATA AAACGATGGA TGTAAATGCC ACCGAAGTAA AAAAGAAGAA GGTCACGATT
GACCCTGTTA TCTTTTTCCC TTCATTGCTT GCGGTCATAT TACTGTCTTA TTTGACGGTA
AGAGACTTGG ATGCCGCTAA TTTAGCTATC AGCGAAGTCT TCCACTATTT AACTCACTCT
TGGGGATGGC TTTTTGAGTG GTACATGATC TTCATGGGAG CCGGTTGGGC CTGGTTGACC
TGGGGACCAT ATTCTAACAA TCGCTTAGGT CAAGAAGCAC CAGAATTTAG TACAGCAAGC
TGGATATTCC TGATGTTTGC TTCGTGTACC TCCGCAGCGG TGTTGTTCTG GGGCTCACTA
GAAGTCTATT ACTATGTTAC TTACCCACCT TTTGATATTG AGCCTTTGTC TATTCAAGCC
AAAGAGCTAG GACTTGCATA CAGTCTATTC CATTGGGGAC CACTTCCTTG GATGGGTTAC
GGCTTCTTTA CTGTTGCTTT GGGTTACTTC CTATTCGTTA AGAAGATGGA TGTGGTTCGT
CCAAGTGGCA CTTTAGAGCC TGTATTAGGT AAGCATCACA AAGGCTTTAT CGGGATCTTT
ATCGATAACG TTTATGTTGT TGCATTGATC CTTGCTATGG GTACCAGCTT AGGTTTGGCC
ACTCCGCTAG TAACTGAGTG TATTCAATGG TTATTTGGTA TTCCACGTAC CTCGGCAGTT
GACACTATCG TTATCTCTTC ATGGATTGTA TTCAACGCTA TCTGTGTCGC TTTTGGTCTG
ACTAAAGGCA TTAAGATCGC CAGTGATTTA AGAAGTTATT TAAGCATCAT CATGCTGGTT
TGGGTATTCC TTATTGGCGC AACCAGTTTC ACAGTGAACT ATTTCACTGA CTCTGTGGGC
ATCATGTTGG AACTACTTCC TCGCATGTTG TTCAACACGG CTTCAGTTAG TGAAGGCAGC
TTCCCGCAAG ATTGGACCGT ATTCTACTGG GCTTGGTGGG TCGTGTATGG CATCCAGATG
TGTATCTTCT TAGCTAAGAT CTCTCGTGGC CGTACCGTAC GTGAACTTTG TTTAACTATG
GTTGCTGGTT TGACTGCTTC TACCTGGTTC CTTTGGACCA TCCTAGGTAG TAATACCATG
AACTTGATGA ATGAAAATCT CATCAATATG CCTCAACTGA TTGAACAATA TGGTGCTGCT
AGGGCCATTA TCGAAACCTG GGCCGCATTA CCGTTCAGCA CTATCACTAT GTGGGGCTTC
TTCATCTTAT GTTTCCTTGC AACAGTGACC CTAGTTAACG CCTGTTCCTA CACCTTAGCC
ATGTCGACCT GTAAAGGCGC CGACGCCGAC AACGAGCCAC CAATCTGGGT TCGTGTAGGT
TGGTCTGTAC TTGTGGGTGT TATCGGTATC GTTCTGTTAT CACTCGGTGG CTTGAAGCCA
CTGCAAACGG CAATCATTGC CGGTGGTGCA CCACTGATTA TCGTCAACGT CATGATCATC
ATCTCTTTCT TGAAAGATGC TCGTAAAAAT AATTGGAAAC CTGTCGGTGA AGAGGCTTAG
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| Protein sequence | MNDKTMDVNA TEVKKKKVTI DPVIFFPSLL AVILLSYLTV RDLDAANLAI SEVFHYLTHS
WGWLFEWYMI FMGAGWAWLT WGPYSNNRLG QEAPEFSTAS WIFLMFASCT SAAVLFWGSL
EVYYYVTYPP FDIEPLSIQA KELGLAYSLF HWGPLPWMGY GFFTVALGYF LFVKKMDVVR
PSGTLEPVLG KHHKGFIGIF IDNVYVVALI LAMGTSLGLA TPLVTECIQW LFGIPRTSAV
DTIVISSWIV FNAICVAFGL TKGIKIASDL RSYLSIIMLV WVFLIGATSF TVNYFTDSVG
IMLELLPRML FNTASVSEGS FPQDWTVFYW AWWVVYGIQM CIFLAKISRG RTVRELCLTM
VAGLTASTWF LWTILGSNTM NLMNENLINM PQLIEQYGAA RAIIETWAAL PFSTITMWGF
FILCFLATVT LVNACSYTLA MSTCKGADAD NEPPIWVRVG WSVLVGVIGI VLLSLGGLKP
LQTAIIAGGA PLIIVNVMII ISFLKDARKN NWKPVGEEA
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