| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_4035 |
|---|
| Symbol | caiC |
|---|
| ID | 5664419 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 4899535 |
|---|
| End bp | 4901088 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 641238699 |
|---|
| Product | putative crotonobetaine/carnitine-CoA ligase |
|---|
| Protein accession | YP_001503880 |
|---|
| Protein GI | 157963846 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.948769 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATATCG TTGGTAGCAA AACATTAAGA TGCATGTGGG AAGAGCGTGC TCGCAAATTC
AGTAATAACA CAGCGTTGGT TTATGAGGAT GCTGCTGGCG ATGTCCAAGA ATATACTTAT
AGTCATTTAA ATGCCGAAAT AAATAGAGCG GCAAATTTAT TCCTTAGCTT AGGAATTAAT
AAAGGCGATA AAGTAGCTGT ACAGTTATAT AACAGTCCAC AATTTATTTT CTGCTGGTTT
GGGTTAGCTA AGATAGGTGC GGTAATCGTG CCTATTAATA ACCAATACCT GTTTGCAGAG
TGCCAATACA TTATTAATAA GTGTGCTGTT AAAGCTGTTG TTATTGAGGA AGAGTTCCTA
CCCATCTATA CACGGATGAA ACAAGAAACA GATAACACAA TAAATAATAT ATTGGTTACA
AGAACGACTA ACCCAGAGAT ATCGGACTCG ATGAACTTCG ATACTTTGCT AAGTCAGCAA
GTTGTAGAAT TAATTCAGCG CGTGACGATT AGTAGTGACG ATGTGGCCGA AATATTATTT
ACCTCAGGTA CAACATCACG GCCTAAAGGC GTGGAGATCA CCCACTGTAA CTTGCAGTTT
GCAGGTTACT TTACGGCGTG GCAAACCTGC CTTCGTAGTG ATGATATTTA TTTGACCATG
ATGCCAAGCT TTCACATCGA TTTTCAATGT AATGCAGCCA TGGCTACATT CACCGTTGGC
GCTAAGTTAG TGATGCTTGA GAAGTACAGT GCCCGCAAGT TCTGGAAACA GATCTGTGAC
TATAGAGCCA CGATTACTCA TAGCATGCCG ATGATCGTGC GTACCTTGAT GTTACAGCCT
ACAACACCAT TTGAACGTGA TCATTGCCTG CGTGATATGT TGTTTTTCCT ACATATATCA
GACCAAGAAA AACTGGATTT TGAAACACGC TTTAACGTGC AGCTGTTTAA CTCCTACGGG
ATGACAGAAA CCTTAGTCGG ACTGATTGGT GATAGTCCAG CCGAGGAGCG TCACTGGCCG
TCAATTGGAC GACCTGGGTT AGGTTATGAG GCTAAGATCG CCGATGAGAA TGGTCAAGAG
CTTGCCCCGA ATGTGATTGG CGATCTCTGG GTTAAAGGTG TGCCCGGTAG AACGATCATG
AAGGGCTACT ACCAAGATAC GAAAGCGACC GAGGAAGTAC TCAGTGCCGA GGGGTGGCTC
TACACTGGCG ATAAGGCTTA TGTAGATGAC AATGGCTTAT TTTATTTTGT CGATAGAAAG
ACAAATATGA TTAAGCGCTC CGGTGAGAAC ATCTCCAGTA GTGAAATAGA AAAAGTTTTA
ATGTCTCACC CTTATATTCT CGATGCCGCA GTTATTGGTG TGCCAGATTT AATTCGAGAT
GAAGCCGTTA AAGCATTTGT CATATTTAAT GAGGGTGTGT CTTTAAGTGT CGAACAAATT
TTGCAGTATT GCGCTGAAAA TATGGCGAAG TTTAAAGTTC CATCTTTTGT TGAAATAAAA
AAGTCTTTCC CAAGAACCTG TACCTGCAAA GTACAAAAAA AACTTCTTAT GTGA
|
|---|
| Protein sequence | MDIVGSKTLR CMWEERARKF SNNTALVYED AAGDVQEYTY SHLNAEINRA ANLFLSLGIN
KGDKVAVQLY NSPQFIFCWF GLAKIGAVIV PINNQYLFAE CQYIINKCAV KAVVIEEEFL
PIYTRMKQET DNTINNILVT RTTNPEISDS MNFDTLLSQQ VVELIQRVTI SSDDVAEILF
TSGTTSRPKG VEITHCNLQF AGYFTAWQTC LRSDDIYLTM MPSFHIDFQC NAAMATFTVG
AKLVMLEKYS ARKFWKQICD YRATITHSMP MIVRTLMLQP TTPFERDHCL RDMLFFLHIS
DQEKLDFETR FNVQLFNSYG MTETLVGLIG DSPAEERHWP SIGRPGLGYE AKIADENGQE
LAPNVIGDLW VKGVPGRTIM KGYYQDTKAT EEVLSAEGWL YTGDKAYVDD NGLFYFVDRK
TNMIKRSGEN ISSSEIEKVL MSHPYILDAA VIGVPDLIRD EAVKAFVIFN EGVSLSVEQI
LQYCAENMAK FKVPSFVEIK KSFPRTCTCK VQKKLLM
|
|---|
| |