| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3930 |
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| Symbol | |
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| ID | 5664314 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 4778165 |
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| End bp | 4779574 |
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| Gene Length | 1410 bp |
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| Protein Length | 469 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641238594 |
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| Product | nitrogen metabolism transcriptional regulator, NtrC, Fis family |
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| Protein accession | YP_001503775 |
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| Protein GI | 157963741 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR01818] nitrogen regulation protein NR(I) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000245107 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGAAC AAGTTTGGAT CCTCGACGAC GATAGTTCGA TACGTTGGGT ACTAGAAAAA
GCACTACAGA GCGCCAAATT TAGCAGCGCA AGCTTTGCCG CAGCGGAATC CTTATGGCAA
GCCTTAGAGA CGGCGCAGCC TCAGGTGATA GTGTCAGACA TTCGTATGCC TGGCACCGAT
GGTTTAACGC TATTAGAGCG CCTGCAAAAC CATTACCCGC ATATTCCGGT TATCATCATG
ACGGCGCATT CCGATCTCGA CAGCGCGGTA AGTGCCTATC AAGCGGGCGC CTTTGAGTAT
CTGCCTAAGC CTTTCGATAT CGATGAAGCG ATATCCTTAG TCGACCGCGC CCTGACTCAC
GCCAAAGAGC AGTCTTCGAC CATCACGACC GAAGAGCCGA TAGTCGCCAC GCCAGAGATC
ATCGGCGAAG CCCCTGCCAT GCAGGAGGTC TTTAGGGCCA TTGGCCGCCT TTCTCGCTCA
TCCATTAGTG TATTGATTAA TGGCCAATCT GGTACGGGTA AAGAGCTGGT TGCTAGCGCG
CTGCATAAAC ACAGCCCACG CAAGGGTAAA CCCTTTATTG CCATCAACAT GGCGGCAATC
CCTAAAGACT TAATTGAATC TGAGCTATTT GGCCATGAAA AAGGTGCCTT TACTGGCGCC
GGTAGCGTGC GCCAAGGCCG CTTCGAGCAA GCCAATGGCG GTACCTTATT TCTAGATGAA
ATTGGCGATA TGCCTCTCGA TGTTCAGACC CGATTATTGC GGGTATTGGC CGATGGCCAG
TTCTATCGCG TCGGCGGCCA TTCACCAGTG CAGGTGGATG TGCGCATCAT AGCCGCAACC
CACCAAAACC TTGAGCAACG GGTACATCAG GGAGGTTTTC GTGAAGATCT GTTCCACCGT
TTAAACGTCA TTCGGGTACA CCTGCCACCA CTATCTCAAC GTCGAGAGGA TATCCCACAA
CTGGCACGTC ACTTCCTGGT AATCGCCGCC AAAGAGATAG GCGTTGAGCC CAAGGTGCTG
ACCAAAGAAA CTGCCAATAA GCTGTCACAA CTCCCCTGGC CCGGCAACGT GCGCCAACTT
GAAAACACCT GCCGCTGGTT AACTGTCATG GCCTCGGGGC AGGAGATCTT GCCACTGGAC
TTGCCACCTG AGCTACTGCA AGAACCTAAG CTGAGCCATG CTCAAAGCAG TGACTGTGAT
GACTGGCAAG GCGCATTAAA GCTGTTTATC GATCAACGCC TCAGTGACGG CGATAGCGAT
CTGCTTACCG AAGTGCAGCC AGCCTTCGAG CGCATCTTAC TCGAAACCGC CCTTAAACAT
ACCAATGGCC ATAAGCAAGA AGCGGCTAAA CGCCTAGGCT GGGGACGTAA TACTCTAACC
CGTAAATTAA AAGAGCTAGA AATGGATTAG
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| Protein sequence | MTEQVWILDD DSSIRWVLEK ALQSAKFSSA SFAAAESLWQ ALETAQPQVI VSDIRMPGTD
GLTLLERLQN HYPHIPVIIM TAHSDLDSAV SAYQAGAFEY LPKPFDIDEA ISLVDRALTH
AKEQSSTITT EEPIVATPEI IGEAPAMQEV FRAIGRLSRS SISVLINGQS GTGKELVASA
LHKHSPRKGK PFIAINMAAI PKDLIESELF GHEKGAFTGA GSVRQGRFEQ ANGGTLFLDE
IGDMPLDVQT RLLRVLADGQ FYRVGGHSPV QVDVRIIAAT HQNLEQRVHQ GGFREDLFHR
LNVIRVHLPP LSQRREDIPQ LARHFLVIAA KEIGVEPKVL TKETANKLSQ LPWPGNVRQL
ENTCRWLTVM ASGQEILPLD LPPELLQEPK LSHAQSSDCD DWQGALKLFI DQRLSDGDSD
LLTEVQPAFE RILLETALKH TNGHKQEAAK RLGWGRNTLT RKLKELEMD
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