Gene Spea_3827 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_3827 
Symbol 
ID5664211 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand- 
Start bp4652341 
End bp4653435 
Gene Length1095 bp 
Protein Length364 aa 
Translation table11 
GC content49% 
IMG OID641238491 
Product3-isopropylmalate dehydrogenase 
Protein accessionYP_001503672 
Protein GI157963638 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0473] Isocitrate/isopropylmalate dehydrogenase 
TIGRFAM ID[TIGR00169] 3-isopropylmalate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTTATC AGATTGCAGT ACTGGCCGGA GATGGCATTG GACCAGAGGT GATGGCTGAA 
GCACGTAAGG TGTTAAAAGC AGTTGAACAA CGTTTTACAC TTTCTATTGA ATATTCTGAG 
TACGATGTTG GCGGCGCCGC TATCGATAAT CATGGCTGCC CACTTCCAGA GCAAACCCTA 
AAAGGCTGTG AAGCTGCAGA TGCGATTTTG TTTGGCTCGG TAGGCGGTCC TAAATGGGAA 
CACTTAGCCC CAAACGATCA ACCTGAGCGT GGTGCATTAT TGCCACTTCG CGGCCATTTT 
GAGTTGTTCT GTAATATGCG CCCTGCCAAA TTACACGCAG GTCTTGAGCA TATGTCACCA 
TTGCGCAGCG ATATCTCTTC TCGTGGTTTT GATGTGGTTT GTGTTCGCGA GCTAACAAGC 
GGGATCTACT TTGGTAAGCC CAAGGGGCGC CAAGGTGAAG GCGAAAATGA AGAAGCCTTC 
GATACTATGC GTTATAGCCG TAAAGAGATT AGACGCATTG CAAAAATCGC CTTCGAGGCA 
GCTCAAGGTC GTCGTAAGAA AGTCACTTCG GTAGACAAAG CCAACGTGCT CGCCTGTTCG 
GTGTTATGGC GTGAAGTGGT TGAAGAGGTT GCTAAAGAGT TTCCAGAGGT CGAGCTAGAG 
CATATCTATA TCGATAACGC GACTATGCAG CTACTACGCC GCCCCGATGA GTTCGATGTC 
ATGCTGTGTT CAAACCTTTT CGGCGACATC ATCTCTGATG AGATAGCTAT GCTAACAGGC 
TCAATGGGAT TACTGTCTTC AATTAGCATG AACAGCTCTG GTTTTGGTTT GTATGAGCCT 
GCTGGTGGCA GTGCGCCAGA TATCGCGGGT CAGGGCATTG CTAACCCTGT GGCGCAAATT 
CTATCGGCAG CCTTGTTGTT GCGTCATAGC CTTAAACTTG AGGACGCGGC AACGGCCATT 
GAAAACGCCG TAGGAAAAGC GCTGAGTGAT GGCTACTTGA CGGGGGAATT GTTGCCTGCG 
GAGCAGCGTC ACAATGCAAA ATCGACTAGC GAGATGGGAG ATTACATCTC TCAGTTAGTA 
AGAGAGGGGG TGTAA
 
Protein sequence
MSYQIAVLAG DGIGPEVMAE ARKVLKAVEQ RFTLSIEYSE YDVGGAAIDN HGCPLPEQTL 
KGCEAADAIL FGSVGGPKWE HLAPNDQPER GALLPLRGHF ELFCNMRPAK LHAGLEHMSP 
LRSDISSRGF DVVCVRELTS GIYFGKPKGR QGEGENEEAF DTMRYSRKEI RRIAKIAFEA 
AQGRRKKVTS VDKANVLACS VLWREVVEEV AKEFPEVELE HIYIDNATMQ LLRRPDEFDV 
MLCSNLFGDI ISDEIAMLTG SMGLLSSISM NSSGFGLYEP AGGSAPDIAG QGIANPVAQI 
LSAALLLRHS LKLEDAATAI ENAVGKALSD GYLTGELLPA EQRHNAKSTS EMGDYISQLV 
REGV