| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3816 |
|---|
| Symbol | murE |
|---|
| ID | 5664200 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 4640039 |
|---|
| End bp | 4641505 |
|---|
| Gene Length | 1467 bp |
|---|
| Protein Length | 488 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641238480 |
|---|
| Product | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase |
|---|
| Protein accession | YP_001503661 |
|---|
| Protein GI | 157963627 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0769] UDP-N-acetylmuramyl tripeptide synthase |
|---|
| TIGRFAM ID | [TIGR01085] UDP-N-acetylmuramyl-tripeptide synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTAATAC GCGATCTATT AGCGCCATGG TTCCATTATT CGGGAGCCGA AGACTTCTTG
GAGATCACTT TAGATAGCCG TGCTGTGCAA GCAGGTTATC TGTTCGTTGC TATTCCAGGC
TATCAAGTCG ATGGCCGCAA GTTTATAGCC GCCGCCTTTG AGCGCGGTGC AAGCGCTGCT
TTAGTACATA CAGATTCTCC CGAAAAGCAC GGCACTGTGG TTAACGATGG TGGATTACAG
ATCCTGTTTT TCCAGCTGAA TCGACAAATT TCAGCCTTAG CCGCACAGGC TTACCCTCTG
TCGCAATCGC GCCCACAAAT TGTCGGTGTG ACTGGGACTA ATGGTAAAAC CTCAGTGACT
CAGCTAATAG CTCAACTGCA GTTGCTGCAA AGTAAGCAAA CAGCAGTGAT GGGCACCTTA
GGTAATGGCC TTTGGGGCGA GCTAGTCGAT AGCGGCAACA CCACTGCCGA CCCTATTACG
CTTATCAAGC AGTTACAGGG GGTTGAGCAA AGGGGCGCAG ATACTTGTGC GATGGAGGTC
TCTAGCCATG GCCTAGTACA AGGCAGAGTC GAAGCCGTTC CCTTTGATGT CGCAGTGTTT
ACCAACTTAA GTCGCGATCA TCTCGATTTT CATCATACGA TGGAAGAATA TGGAATCGCC
AAGAAGCGCT TATTTCAGTT CGCCAATTTA CGCGGTGGTT TAATCAATAT CGATGACGTC
GTTGGCCGTG AATGGCTGGC GGATCTAGCG TCTGATAAGT TGTTAGGCTT TAGTGTTAAA
GGTGACTCTA CGGCTGACAT TTATACCAAA GACAACCATT TTCATGATGG AGGCGTGTCT
TGCACCTTAG TGTGGCCAAC TGGTGAAGCT CAGCTTAACT CACCGCTATT GGGTGACTTC
AACCTTTCCA ACTTGGTTGC CGCCCTCGGT GCCCTTTACC TACTAGGTGA AGATATGCAC
ACGCTTGTCG CACTAGCGCC CAAGCTTGAA CCCGTTGCTG GACGAATGGA GCGCTTCACT
AGCAAAGATG GCGTCACGCT TGTTGTCGAC TACGCCCATA CGCCAGATGC GATTGAGCAG
GCGTTAAAGG CACTCCGAGT ACATTGTAAA GGCCAGCTTT GGTGCTTATT CGGTTGTGGT
GGTGATAGAG ATAAAGGTAA GCGCCCTATG ATGGCGGCGA GTGCCGAGCA GTTTGCCGAT
CGCGTCATGG TGACCAGCGA TAACTGCAGA AGTGAAGACC CTAACGCCAT TATTAGCGAT
ATTTTGGCAG GATTGCAGCA TCCACAGCAG GCGCTTTCAC AAGTTGAACG CCAAGTTGCA
ATTAAGGAGA TCGTCGCTCA GGCAGCCTCG GGCGACATGG TATTGCTTGC AGGAAAAGGC
CATGAAACTT ACCAAGAAGT AAATGGTAAA AAACTAAATT ACGATGAAAG AGCATTCGCT
AAAGCGATTG CCGAAGGTAA CGCATGA
|
|---|
| Protein sequence | MLIRDLLAPW FHYSGAEDFL EITLDSRAVQ AGYLFVAIPG YQVDGRKFIA AAFERGASAA
LVHTDSPEKH GTVVNDGGLQ ILFFQLNRQI SALAAQAYPL SQSRPQIVGV TGTNGKTSVT
QLIAQLQLLQ SKQTAVMGTL GNGLWGELVD SGNTTADPIT LIKQLQGVEQ RGADTCAMEV
SSHGLVQGRV EAVPFDVAVF TNLSRDHLDF HHTMEEYGIA KKRLFQFANL RGGLINIDDV
VGREWLADLA SDKLLGFSVK GDSTADIYTK DNHFHDGGVS CTLVWPTGEA QLNSPLLGDF
NLSNLVAALG ALYLLGEDMH TLVALAPKLE PVAGRMERFT SKDGVTLVVD YAHTPDAIEQ
ALKALRVHCK GQLWCLFGCG GDRDKGKRPM MAASAEQFAD RVMVTSDNCR SEDPNAIISD
ILAGLQHPQQ ALSQVERQVA IKEIVAQAAS GDMVLLAGKG HETYQEVNGK KLNYDERAFA
KAIAEGNA
|
|---|
| |