| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3773 |
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| Symbol | |
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| ID | 5664158 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 4586457 |
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| End bp | 4588364 |
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| Gene Length | 1908 bp |
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| Protein Length | 635 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641238433 |
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| Product | regulatory protein CsrD |
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| Protein accession | YP_001503619 |
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| Protein GI | 157963585 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTGA CTCGAATTCT AACTAAAAAA TTGACTAGCT TTTGGCTGAT GTCACTCGCT
GGTGTCGCAT TTATCTGCTT TTTGACAGCC ATGGTCAGCT TTATCCAGCT AACTTACACC
TTTCAACAGC AAAAGGTGAC CGAACTCGAG AATCTGATAG AGCAACAATT TACTCAGCAA
GCAAGTGGCC CCCTTGACGC ATGGCTGCCG CCTTTGCTAC GCGCCTATCG AGCAAATTCT
TTTTCATTAT CTCAAAACAG CCAACCCATT TTTGAATATC AGCCATCGAC ACAAAATGAG
GGAGGCGTTC ACTACCAGAG TTCTCTTGCC GATGGAAAGT TAGTGATGCA GCTAACTCTG
CCTCAGCCAT TTAGTAAAGA TGATGTGAGT TGGGATGAAC TCTTAATTAT CATTATCGGC
TGCGCGGCCG TATTTGCGTT TGTTCGCTTT GGTTTTCGTT GGTTTGCGGT GCACCTCACA
GGTATTGAAG ATCTGGCGCT ACGCTCCAGC CTGATCCTGT CGGGTAAGCA TGATAAGGCG
CTGGCCGAAA AAGGTGATGG TAAGCCTAGG TTAATTAATC GAGCGCTAAC ACATCTGTTG
TTAGAGTTAG ATGACGCCCA TAAAGAGCGG GCTCGCTTCG ATCAGTTTAT TCGCTCAAAT
ACTTTTCTCG ATGCCAGTAC TGGTATTGGT AATCGATTGT TTTTGAAAAA CCGACTCGAT
GCCCTGAGTA ATCACTCGGG GATGATGACC CCAGGGGTAT TATATTTATT AGAGATGGAA
GATTTGGATT TGTTAAGCAA TGAGCTTGGT GAGTACGAGA TTGATGAACT GCTATCTCAG
CTTATCGCCA CCATTAATCA AATCTTAGGG GATAAGGCTA ACAGTATTTT CTCCCGGCGC
TCATACAATC AATTTGCGGT GGTTGTACCG CAGATCTCAC AGAACGAAGC GGATCAGCTG
GTGGCCAAGC TATTACGTTT AGTCTTGAAT CAGATGAATA CGCTGGTTCA GCTACCTGAT
GATTGTTTCC ATATCGGCGG CGCGTACTTT AAGGTCGGAG ACGATAAAGA TGCTTTAGTC
GAAGAGGCTG AACTCGCATT GCGCTCGGCG CAGTTCCAAG GTAGCAGTAG TTGGTTTATG
TATGATAAAG GTGCCGTTGA TGGGGACTTG TCGAAAGGGT CCGTGCGTTG GCGCAGTTTT
CTCGAAAACG TCTTGGTCAG CAAGCGAATT TTCCTATTTT CTCAGCCAGT TGTAGACAGT
GACTCCCATG CTCACCATCA AGAGGTTACT TGTCGATTAC GAGATACGCA GGGAAACCTT
GTTAGAGCTA CACTGTTTCT ACCTATGGCG ATAAAGTGCG GTTTAACCCC ACAAATTGAG
CGTCAGGTCA TAGAGATGGT GATGTTTGAT TTGTTGCCAA AACATAAAGA TAACAGCCTC
AAGTTTAGTA TTAATTTGAG CTTAGATACC TTAGTCAGTC GTGCTTTTGT CCGCTGGTTG
AAGACCACAT TACTCGAGTA TCGCCATCTA GCTCCTAGGC TTATCTTTGA GGTGAATGAA
GACATTTTAG TGAATCATCA GGCACAGCTG GTAGAGCCCT TGAATATGCT CAATAAAATG
GGCGCAAGTA TTAGTGTCGA TCGTGTGGGT CAACAGGTGG TTAGTACAGA GTATATTCAC
CATTATCCAA TCTCTATTAT TAAGCTGCAT CGTTCTATCG TTAATCAAAT CCATCTGCGC
GCCGAGAACC AACTGTTTGT TCGAAGCCTG ATTGGAGGTT TGTTCCGGAC CGGAGTACAG
GTGTGTGCAG AAGGGGTGGA GGTATTCGAG GAGTGGCAAA CCCTGCAGAT TTTAGGGGTG
AGTGCAGGCC AGGGAAGTTT CTTTAGTGAG CCGATCGAAG AGGTATAG
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| Protein sequence | MKLTRILTKK LTSFWLMSLA GVAFICFLTA MVSFIQLTYT FQQQKVTELE NLIEQQFTQQ
ASGPLDAWLP PLLRAYRANS FSLSQNSQPI FEYQPSTQNE GGVHYQSSLA DGKLVMQLTL
PQPFSKDDVS WDELLIIIIG CAAVFAFVRF GFRWFAVHLT GIEDLALRSS LILSGKHDKA
LAEKGDGKPR LINRALTHLL LELDDAHKER ARFDQFIRSN TFLDASTGIG NRLFLKNRLD
ALSNHSGMMT PGVLYLLEME DLDLLSNELG EYEIDELLSQ LIATINQILG DKANSIFSRR
SYNQFAVVVP QISQNEADQL VAKLLRLVLN QMNTLVQLPD DCFHIGGAYF KVGDDKDALV
EEAELALRSA QFQGSSSWFM YDKGAVDGDL SKGSVRWRSF LENVLVSKRI FLFSQPVVDS
DSHAHHQEVT CRLRDTQGNL VRATLFLPMA IKCGLTPQIE RQVIEMVMFD LLPKHKDNSL
KFSINLSLDT LVSRAFVRWL KTTLLEYRHL APRLIFEVNE DILVNHQAQL VEPLNMLNKM
GASISVDRVG QQVVSTEYIH HYPISIIKLH RSIVNQIHLR AENQLFVRSL IGGLFRTGVQ
VCAEGVEVFE EWQTLQILGV SAGQGSFFSE PIEEV
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