Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_3719 |
Symbol | |
ID | 5664104 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 4524112 |
End bp | 4525728 |
Gene Length | 1617 bp |
Protein Length | 538 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641238379 |
Product | MscS mechanosensitive ion channel |
Protein accession | YP_001503565 |
Protein GI | 157963531 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0668] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00173633 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCATAAAA TGCTCCCCCA AATTTTAATG CTTATTCTAA GCTTATGCTC ATTTACAGCA GCGGCTGAGA ATACAGAATT AACTAATAAT TTAAATAAAA TCCAAAGCCT TATTGATAAT GATGTCAAAG CACTACCAAG CACTAAAGGC GAAATTAAGA GTTTTCTGGA ATATCGCATA GGTCGCAATG CAGCTTTACT TCAGGACACC TTGAAGGAGC AAGTAGAAAA AACCGATCCA GATTTCGCTT TCCTAAAGCC TTATATTGTT AAGCAGTTAG CCTTTACTAA TGAAGTAGAA GCTTACTTTG AAAAGCAGAA AGCCAGCCTG ATGAGTCAAG TCGGTAGCGG TAGCGACAAT AAAGTCATGG TTGGCCTAAT GCAGATCCAG CGTGAGCAGG ATAAGCTATT CACTGCAGAA AAAAGCCTAT TAAACTGGGC CCAAAAGGCA GGAATCGATA CCGACGCACA AACTAAAACC TTTATCGCGA CCCTGATTAC TCGTGCCGAT GATCTCAATA GCTTCGTCTA CTACAACCAA GAGCGCCTCA CTCAAGCTGT AGCCGATGTT CAAGTTGCGG GTACCGATGT TAGCGCCGAG CAGAAGTCTC TTGTGGTAGA CCTAAAAGAG CGCTTAGAAC AGAGCTCTAC TAGTCTTTCC ACTACCATAG AGCTGCTCGA TAGCTTGGAC CAAGATACAG CTCTCTATAA GCAAACTCTG TTTAGCATTT CTGGTGATAT CACCCAAGAT GTTTTGAACT TAGATGTTGC CAGCAGCTTA TTGTCTGAGT GGATGACTAT CGCTAAGAAT CAAGCGATGG AAAATGGTGC CAGCATTCTA TTTAAGCTAA TTATCTTCTG CCTTATCCTG TTCCTATCTA GCCTAGTCGG CAAGGTCGTT AAAAGTGTGG TGCAGAAGAC GGTCAGCAAC TCTAAGCTTA AATTTAGCAT GCTGCTGCAA GACTTCTTTA TCTCACTCTC GGGTAAAGCG GTTTTCGCAC TCGGTCTATT GATTGCCCTA TCTCAACTTG GCTTTGAACT GGCGCCACTG CTTGCCGGTT TCGGTATTGC CGGTGTAATT ATTGGTTTTG CTTTGCAAGA TACACTGTCT AATTTCGCTT CAGGCATGAT GATCTTGATC TACCGTCCGT TCGACGTCGG TGATCTTATC AACGCAGGCG GCGTCACCGG TCGTGTCAGT CATATGAGCT TAGTATCGAC CACGATTAAG ACACTAGATA ACCAGAGACT TATCGTGCCA AACAATAAGA TCTGGGGCGA CACCATCAAT AACATTACCG TTGAGCATCA GCGTCGTGTG GATATGACCT TTGGTATTGG CTATGGCGAT AATATCGAGC ACGCAGAAAA AGTGCTTCAC GATATCGTAA TGGCGCACCC TCTAGTGCTT AAAGATCCAG AACCTATGAT CAAGCTACAT ACCTTAGGTG AGTCTTCGGT GGACTTTATT GTTCGTCCTT GGGCTAAGCC TGAAGATTAC TGGGATGTAT ACTGGGATAT CACTCGCACG GTTAAAATGC GCTTCGACGC CGAAGGCATT AGCATTCCGT TCCCACAGCG CGATGTGCAT ATCTATCAAA CGGCTATAGA GAAGTAA
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Protein sequence | MHKMLPQILM LILSLCSFTA AAENTELTNN LNKIQSLIDN DVKALPSTKG EIKSFLEYRI GRNAALLQDT LKEQVEKTDP DFAFLKPYIV KQLAFTNEVE AYFEKQKASL MSQVGSGSDN KVMVGLMQIQ REQDKLFTAE KSLLNWAQKA GIDTDAQTKT FIATLITRAD DLNSFVYYNQ ERLTQAVADV QVAGTDVSAE QKSLVVDLKE RLEQSSTSLS TTIELLDSLD QDTALYKQTL FSISGDITQD VLNLDVASSL LSEWMTIAKN QAMENGASIL FKLIIFCLIL FLSSLVGKVV KSVVQKTVSN SKLKFSMLLQ DFFISLSGKA VFALGLLIAL SQLGFELAPL LAGFGIAGVI IGFALQDTLS NFASGMMILI YRPFDVGDLI NAGGVTGRVS HMSLVSTTIK TLDNQRLIVP NNKIWGDTIN NITVEHQRRV DMTFGIGYGD NIEHAEKVLH DIVMAHPLVL KDPEPMIKLH TLGESSVDFI VRPWAKPEDY WDVYWDITRT VKMRFDAEGI SIPFPQRDVH IYQTAIEK
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