Gene Spea_3719 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_3719 
Symbol 
ID5664104 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand
Start bp4524112 
End bp4525728 
Gene Length1617 bp 
Protein Length538 aa 
Translation table11 
GC content44% 
IMG OID641238379 
ProductMscS mechanosensitive ion channel 
Protein accessionYP_001503565 
Protein GI157963531 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0668] Small-conductance mechanosensitive channel 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00173633 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCATAAAA TGCTCCCCCA AATTTTAATG CTTATTCTAA GCTTATGCTC ATTTACAGCA 
GCGGCTGAGA ATACAGAATT AACTAATAAT TTAAATAAAA TCCAAAGCCT TATTGATAAT
GATGTCAAAG CACTACCAAG CACTAAAGGC GAAATTAAGA GTTTTCTGGA ATATCGCATA
GGTCGCAATG CAGCTTTACT TCAGGACACC TTGAAGGAGC AAGTAGAAAA AACCGATCCA
GATTTCGCTT TCCTAAAGCC TTATATTGTT AAGCAGTTAG CCTTTACTAA TGAAGTAGAA
GCTTACTTTG AAAAGCAGAA AGCCAGCCTG ATGAGTCAAG TCGGTAGCGG TAGCGACAAT
AAAGTCATGG TTGGCCTAAT GCAGATCCAG CGTGAGCAGG ATAAGCTATT CACTGCAGAA
AAAAGCCTAT TAAACTGGGC CCAAAAGGCA GGAATCGATA CCGACGCACA AACTAAAACC
TTTATCGCGA CCCTGATTAC TCGTGCCGAT GATCTCAATA GCTTCGTCTA CTACAACCAA
GAGCGCCTCA CTCAAGCTGT AGCCGATGTT CAAGTTGCGG GTACCGATGT TAGCGCCGAG
CAGAAGTCTC TTGTGGTAGA CCTAAAAGAG CGCTTAGAAC AGAGCTCTAC TAGTCTTTCC
ACTACCATAG AGCTGCTCGA TAGCTTGGAC CAAGATACAG CTCTCTATAA GCAAACTCTG
TTTAGCATTT CTGGTGATAT CACCCAAGAT GTTTTGAACT TAGATGTTGC CAGCAGCTTA
TTGTCTGAGT GGATGACTAT CGCTAAGAAT CAAGCGATGG AAAATGGTGC CAGCATTCTA
TTTAAGCTAA TTATCTTCTG CCTTATCCTG TTCCTATCTA GCCTAGTCGG CAAGGTCGTT
AAAAGTGTGG TGCAGAAGAC GGTCAGCAAC TCTAAGCTTA AATTTAGCAT GCTGCTGCAA
GACTTCTTTA TCTCACTCTC GGGTAAAGCG GTTTTCGCAC TCGGTCTATT GATTGCCCTA
TCTCAACTTG GCTTTGAACT GGCGCCACTG CTTGCCGGTT TCGGTATTGC CGGTGTAATT
ATTGGTTTTG CTTTGCAAGA TACACTGTCT AATTTCGCTT CAGGCATGAT GATCTTGATC
TACCGTCCGT TCGACGTCGG TGATCTTATC AACGCAGGCG GCGTCACCGG TCGTGTCAGT
CATATGAGCT TAGTATCGAC CACGATTAAG ACACTAGATA ACCAGAGACT TATCGTGCCA
AACAATAAGA TCTGGGGCGA CACCATCAAT AACATTACCG TTGAGCATCA GCGTCGTGTG
GATATGACCT TTGGTATTGG CTATGGCGAT AATATCGAGC ACGCAGAAAA AGTGCTTCAC
GATATCGTAA TGGCGCACCC TCTAGTGCTT AAAGATCCAG AACCTATGAT CAAGCTACAT
ACCTTAGGTG AGTCTTCGGT GGACTTTATT GTTCGTCCTT GGGCTAAGCC TGAAGATTAC
TGGGATGTAT ACTGGGATAT CACTCGCACG GTTAAAATGC GCTTCGACGC CGAAGGCATT
AGCATTCCGT TCCCACAGCG CGATGTGCAT ATCTATCAAA CGGCTATAGA GAAGTAA
 
Protein sequence
MHKMLPQILM LILSLCSFTA AAENTELTNN LNKIQSLIDN DVKALPSTKG EIKSFLEYRI 
GRNAALLQDT LKEQVEKTDP DFAFLKPYIV KQLAFTNEVE AYFEKQKASL MSQVGSGSDN
KVMVGLMQIQ REQDKLFTAE KSLLNWAQKA GIDTDAQTKT FIATLITRAD DLNSFVYYNQ
ERLTQAVADV QVAGTDVSAE QKSLVVDLKE RLEQSSTSLS TTIELLDSLD QDTALYKQTL
FSISGDITQD VLNLDVASSL LSEWMTIAKN QAMENGASIL FKLIIFCLIL FLSSLVGKVV
KSVVQKTVSN SKLKFSMLLQ DFFISLSGKA VFALGLLIAL SQLGFELAPL LAGFGIAGVI
IGFALQDTLS NFASGMMILI YRPFDVGDLI NAGGVTGRVS HMSLVSTTIK TLDNQRLIVP
NNKIWGDTIN NITVEHQRRV DMTFGIGYGD NIEHAEKVLH DIVMAHPLVL KDPEPMIKLH
TLGESSVDFI VRPWAKPEDY WDVYWDITRT VKMRFDAEGI SIPFPQRDVH IYQTAIEK