| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3647 |
|---|
| Symbol | |
|---|
| ID | 5664032 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 4434861 |
|---|
| End bp | 4435352 |
|---|
| Gene Length | 492 bp |
|---|
| Protein Length | 163 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641238307 |
|---|
| Product | peptidyl-prolyl cis-trans isomerase cyclophilin type |
|---|
| Protein accession | YP_001503493 |
|---|
| Protein GI | 157963459 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0652] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTATTT TTACTACCAA TTTAGGTGAT ATCGAGATTG AACTCGATCT GGAAAAGGCG
CCAGTTAGCG CTAAGAACTT TATCAAGTAC TGCCAAGATG GCTTTTTTGA GGGCACGATT
TTTCATCGCG TCATAAAAGG TTTTATGATC CAAGGTGGCG GTTTTACTGC TGAGATGGAA
GAGAAGCCGA CTCGAGCGGC TATCGTTAAC GAAGCTAATC GAGGCCTTAA GAATGTGCGT
GGCAGTATCG CCATGGCGCG CACCGATGCG CCGCATTCTG CTACCGGGCA ATTTTTTATC
AACTTAGCCG ACAATAACTT TTTAGATCAT ACCGCAACGA CCAATGCGGG CTGGGGTTAT
GCGGTATTTG GTCAAGTCAC TAAAGGTATG GATGTGGTCA CTAAGATTGG CCGCGCGAAA
ACGACCTCTA AAGGCGACCA TGATGATGTA CCAAGAGAAA CTATCATCAT CGAAAAAGTC
ACCATCTGTT AG
|
|---|
| Protein sequence | MIIFTTNLGD IEIELDLEKA PVSAKNFIKY CQDGFFEGTI FHRVIKGFMI QGGGFTAEME
EKPTRAAIVN EANRGLKNVR GSIAMARTDA PHSATGQFFI NLADNNFLDH TATTNAGWGY
AVFGQVTKGM DVVTKIGRAK TTSKGDHDDV PRETIIIEKV TIC
|
|---|
| |