| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3635 |
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| Symbol | rumB |
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| ID | 5664020 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 4425503 |
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| End bp | 4426579 |
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| Gene Length | 1077 bp |
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| Protein Length | 358 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641238295 |
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| Product | 23S rRNA methyluridine methyltransferase |
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| Protein accession | YP_001503481 |
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| Protein GI | 157963447 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR02085] 23S rRNA (uracil-5-)-methyltransferase RumB |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGTGC AAGTCGCAGC TAAGTCGCAG GTGCTAAGCC AACTTCTGAG TGACTTCGAA
GTTGAGCAGT GGCACGAGCC AGTATTTGGC CCAGACAGTG GTTTTCGTAA TAAAGCTAAA
ATGGTCGTAC TCGGCGCGGC CCATCAGCCA ATCCTTGGGA TCGTGACCCC GACAGGTGAG
CCAGTAAGCT TATGTGATTG CAACTTGTAC CCAGAGGATA TGCAGCTGTT GCTGCATCGC
TTAGAACAGT TTGTGCGCCA AGCAGGCATA CCACCTTATA ATGTCGACAA AGCAAAAGGT
GAGCTTAAGT TTATTTTGCT GACCCGCAGT CAAATCAAAG GCGAATACCT ACTGCGCTTT
GTACTCAAGT CTCACAAGTC TATCGAGCGT ATTGAACGCG AGCTACCAAA GCTATTAAGC
GAGTACCCGC AGATCAAAGT GGTGTCGGTA AACATTCAGC CTGTGCATAT GGCCATTCTC
GAAGGTGAAG AGGAGATCTT CTTAACCGAA GAGACCCGCT TGTCTGAGCA ATTTAACGAT
GTGCCACTGT TTATTCGCCC AAAAAGTTTC TTTCAGACTC ATCCACAAAT TGCAGCCAAA
CTTTACCAAA CTGCTCGCGA GTGGGTTGCC GAGCTAAAAC CTAGCTCATT GTGGGATCTT
TTCTGTGGTG TGGGTGGCTT TGGTCTGCAC TGCGCGTCAA AAACGATTCC ATTGACTGGC
ATTGAAATCT CAAGCGAGGC TATTGCCTGC GCCAAAATAT CTGCAGAAAC CATGGGATTA
ACTCAAGTGG ATTTCACCGC GCTTGATTCG ACCGGTTTTG CACAAGGTTG TGATGCCACT
GACAAGCCAG ATGTGGTCAT AGTTAATCCG CCAAGACGTG GCATAGGTGA AAGCTTGTGT
CAGTCACTGT CAGATTTTGC TCCTAAAGCC ATCTTGTACT CAAGCTGTAA CCCACACACC
TTAGCTAAAG ATTTAGCCAA TATTCAGGGC TACCATATTC AAAAGGTACA GCTATTCGAT
ATGTTCCCGC ACACGGATCA CTTCGAAGTC TTAGTAATGC TAGTTAAGCC TAGTTAA
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| Protein sequence | MSVQVAAKSQ VLSQLLSDFE VEQWHEPVFG PDSGFRNKAK MVVLGAAHQP ILGIVTPTGE
PVSLCDCNLY PEDMQLLLHR LEQFVRQAGI PPYNVDKAKG ELKFILLTRS QIKGEYLLRF
VLKSHKSIER IERELPKLLS EYPQIKVVSV NIQPVHMAIL EGEEEIFLTE ETRLSEQFND
VPLFIRPKSF FQTHPQIAAK LYQTAREWVA ELKPSSLWDL FCGVGGFGLH CASKTIPLTG
IEISSEAIAC AKISAETMGL TQVDFTALDS TGFAQGCDAT DKPDVVIVNP PRRGIGESLC
QSLSDFAPKA ILYSSCNPHT LAKDLANIQG YHIQKVQLFD MFPHTDHFEV LVMLVKPS
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