| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3616 |
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| Symbol | |
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| ID | 5664002 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 4407138 |
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| End bp | 4408601 |
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| Gene Length | 1464 bp |
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| Protein Length | 487 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641238278 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_001503464 |
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| Protein GI | 157963430 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0182429 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGCGT CACTCCAGCT CAAAATGGGT CAGCAGCTCA CCATGACTCC CCAGTTACAA
CAGGCCATTC GCCTGTTACA ACTGTCTTCT TTAGAGCTGC AACAAGAGAT CCAACAAGCA
TTAGACTCTA ATCCGCTATT GGAATTAGAT GAAGAGCAGT CAGACGGTGA TTTAGGCGAC
AATGAAGACC AATCATCAAA CGATGCCAAT AGTGACCTCA TCCAAGATAG CGCTAGCGTT
GAAACCTCCG ATGCCCTAAC CCAAGACTCT ATGCCAGATG ATCTGCCAAT GGACACCACT
TGGGATGAAG TTTATACCGT CTCGTCAAAC TCCAGCTCTG GAGTTAGCCG TGAAGACGAT
ATGCCATTCC AAGGTGAAAC CAGCGAAGGC TTATATGAAC ATTTAGAGTG GCAGAAAAAC
CTCACACCGT TTTCAGATAA CGATCTTGCA ATCGCCACCG CGATTATCGA CGCCATTGAC
GAACGTGGCT ACCTTACCCA AAGCTGCGAC GATATTTTAG AAGCTATGGG CGATCCTGAA
ACCGAGCTTG ATGAAGTCGA AGCGGTATTA AAGCGCATCC AGCATTTTGA CCCTATTGGT
GTCGCCGCGC GTAATTTGAG TGAATGCTTG CTTATCCAGC TGGCACAATA TGCTGCAGAA
ACCCCGCATA TCGACAATGC CAGATTACTG ATAAAAGATT ATTTAGACTT AATTGCAGGC
CGCGATTTTA GGCAGTTAAT GCGTAAAACC AAGCTTAAAG AAGATGAACT ACGTGATGCG
ATAACACTTA TTCAGACCCT TAATCCAAGA CCAGGGCTGG CGATTGCTCG CAGCAAAGAC
GAGTATGTTA TCCCTGACGT TTCCGTGTGC AAGAAAAAAG GTCGCTGGGT GGTTGAGCTT
AATCCTGACT ATATGCCTAA GATTAATGTT AACCAACATT ATGCCTCTAT GGCGCGTAGC
ACCACTAATC AGGCCGATGG TCAATTTATT CGTGGTCATC TGCAGGAAGC TAAGTGGTTT
ATTAAGAGTC TCGAGAGTCG TAATGACACC TTATTGAAAG TAACCAACTG TATCGTTAAA
TTCCAGCAAG GCTTCTTTGA GTATGGCGAA GAAGCCATGA AGCCTATGGT ACTCAATGAT
ATTGCCGAAG CAGTTGAGAT GCACGAGTCG ACCATTTCAC GGGTGACTAC CCAAAAATAT
ATGCACACTC CAAGAGGTAT TTTTGAACTA AAGTACTTCT TCTCAAGCCA TGTCGGTACC
GACGATGGTG GGGAGTGTTC ATCGACCGCA ATCAGAGCGT TTATTAAGAA GTTAGTCGCC
GCAGAAAACC AGAAGAAGCC ATTAAGCGAT AGCAAGATGG CACAACTTTT GGCAGAACAA
GGGATTAAAG TTGCTAGACG TACGATAGCA AAATATCGAG AAGCGATGCT GATCCCCCCC
TCAAACCAAC GTAAGAGTTT ATAA
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| Protein sequence | MKASLQLKMG QQLTMTPQLQ QAIRLLQLSS LELQQEIQQA LDSNPLLELD EEQSDGDLGD
NEDQSSNDAN SDLIQDSASV ETSDALTQDS MPDDLPMDTT WDEVYTVSSN SSSGVSREDD
MPFQGETSEG LYEHLEWQKN LTPFSDNDLA IATAIIDAID ERGYLTQSCD DILEAMGDPE
TELDEVEAVL KRIQHFDPIG VAARNLSECL LIQLAQYAAE TPHIDNARLL IKDYLDLIAG
RDFRQLMRKT KLKEDELRDA ITLIQTLNPR PGLAIARSKD EYVIPDVSVC KKKGRWVVEL
NPDYMPKINV NQHYASMARS TTNQADGQFI RGHLQEAKWF IKSLESRNDT LLKVTNCIVK
FQQGFFEYGE EAMKPMVLND IAEAVEMHES TISRVTTQKY MHTPRGIFEL KYFFSSHVGT
DDGGECSSTA IRAFIKKLVA AENQKKPLSD SKMAQLLAEQ GIKVARRTIA KYREAMLIPP
SNQRKSL
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