Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_3574 |
Symbol | |
ID | 5663960 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | - |
Start bp | 4362382 |
End bp | 4364142 |
Gene Length | 1761 bp |
Protein Length | 586 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641238236 |
Product | flavocytochrome c |
Protein accession | YP_001503422 |
Protein GI | 157963388 |
COG category | [C] Energy production and conversion [S] Function unknown |
COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [COG3976] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01813] flavocytochrome c |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATTTCA AATTAAAAAA GTCAGCGCTA GGCGTGGCAA TTGCCTTACC TGTAATATTA GTTGGTTGTG CAGTAACAAG CGAAATGATC AAATCACAAG GTACGGCTAA AGGTCGACAT GGTGATATTA CTGTAGAAAC AACGTTCCAG AATGGTCAAA TTACTGCAAT TGATATCGTA AAACAAAAAG AGAATAAAGT TCTATCCGCA GCCGTTTATA AAGACGTAAA GCAAGCAATC ATTGATAACA ACAGTGTCAA CGTGGATGGC ATCTCTGGTG CAACGGCCAC TTCTGATGGC TTCAAGCAGG CGGTTGCTAA GTCGGCTGAG CTTGCAGGGG TGACACTGCT CGCAACAGCA GCAATCAATG GTAAAAAAGT TGATGCACAG CCATCAGAAT ACACCTATGA CGTTGTTGTT ATTGGTGCCG GTGGTGCCGG TTTCTCTGCA GGTATCGAAG CGGTTGAGGC TGGCGTATCT GCTGTTATCA TCGAAAAGCA GCCTATTATT GGTGGTAACT CACTTATCTC TGGCGGCGAA ATGAACGTGG CGGGTAGCTG GGTTCAAAAA GGAATGGGCA TCACCGATAG CAAAGAGTCG TTTATTGAAG ATACGTTAAA GGGCGGCGAC TATAAAGGTG ATCCAGAGAT GGTGCGGGTA ATGGTTGATA ATGCTGTTGA AGCGGCCGAA TGGTTACGTG ACGATATCAA AGTTGATTTC TACAAAGACC AAATCTTCCA GTTTGGTGGC CACTCAGTAA AACGTGCCGT CATCCCTAAA GGACACACTG GCGCAGAAGT ATTAAGCAAG TTTGCTGTTA AGGCTGAAGA GATTGGTTTA CCTGTTCATA TGAACACAAC GGCAAAGAAC CTTATCCAAG ATGAGACAGG CCGCGTTGTA GGCGTTAAGG CGATGAAGAA CGGTAAGGTT ATCACTTATC ACGCTAAGAA AGCGGTGGTA ATGGCTGCTG GTGGCTTTGG CGCAAATATC GAAATGCGTA AGAAATTCAA CCCTGAATAC GATGAGCGCT ACGGTACAAC TAACCACTCA GGTGCAACCG GTGACGGTAT CTTAATGTCT GAAGCGGTTA ACGCTAAGAC TGCCAACCTA GGCGAAATCC AAGCGTACCC AATCTGTAAC CCTGAAACAG GTGCTATCGC GTTAATCGCC GATGCGCGTT TCTTTGGTGC TATCTTGGTT AACCAAGAGG GTAAGCGCTT TGTAGAAGAA CTTGATCGCC GTGACGTTAT CTCTAACGCA ATCTTGAACC AAACGGGCAA ATACACTTAT GTTATTTGGA ACCAAAAAAT CGATGATCTT GCTAAGACTA TCGACATGCA CCCTGGCGAA TTCAACGATC TACACTCACG TGGTTTAATG TTTGAAGTTG ACAGCATCGA AGAAGCGGCT GCGAAATTCA ATATTCCTTT AGCTGCGCTA CAAAGCACTA TCAGTGATGT TAATAAGTAT GCGGCTACAG GCAAGGATTT AGCATTTAAT AACCGTGCAG GTCTTGTTGA CATGTCTGAA GGCAAGTACT GGATCTTAAA AGCAACGCCA TCAGTCCATC ACACAATGGG CGGTGTTGCT ACAACGACTA AAGCAGAAGT ATTAGACAAT AGTGGCACCA TCATCAAAGG CTTATACGCT GCTGGTGAAG TAACCGGTCT AACTCATGGC TCTAACCGTC TTGGCGGTAA CGCCTATACC GATATCATCG TTTTTGGTCG CATTGCTGGT CAGCAAGCCG CGGCACAATA A
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Protein sequence | MNFKLKKSAL GVAIALPVIL VGCAVTSEMI KSQGTAKGRH GDITVETTFQ NGQITAIDIV KQKENKVLSA AVYKDVKQAI IDNNSVNVDG ISGATATSDG FKQAVAKSAE LAGVTLLATA AINGKKVDAQ PSEYTYDVVV IGAGGAGFSA GIEAVEAGVS AVIIEKQPII GGNSLISGGE MNVAGSWVQK GMGITDSKES FIEDTLKGGD YKGDPEMVRV MVDNAVEAAE WLRDDIKVDF YKDQIFQFGG HSVKRAVIPK GHTGAEVLSK FAVKAEEIGL PVHMNTTAKN LIQDETGRVV GVKAMKNGKV ITYHAKKAVV MAAGGFGANI EMRKKFNPEY DERYGTTNHS GATGDGILMS EAVNAKTANL GEIQAYPICN PETGAIALIA DARFFGAILV NQEGKRFVEE LDRRDVISNA ILNQTGKYTY VIWNQKIDDL AKTIDMHPGE FNDLHSRGLM FEVDSIEEAA AKFNIPLAAL QSTISDVNKY AATGKDLAFN NRAGLVDMSE GKYWILKATP SVHHTMGGVA TTTKAEVLDN SGTIIKGLYA AGEVTGLTHG SNRLGGNAYT DIIVFGRIAG QQAAAQ
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