| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3563 |
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| Symbol | tolC |
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| ID | 5663949 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 4350531 |
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| End bp | 4351835 |
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| Gene Length | 1305 bp |
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| Protein Length | 434 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641238225 |
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| Product | outer membrane channel protein |
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| Protein accession | YP_001503411 |
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| Protein GI | 157963377 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000135514 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTCA AGATCCGTTC TCTATGTGCC GCATTAACCC TTGCAGCAAC AACGCAAGTA
GCTCATGCCG ATGACCTTCT ACAAATATAT CAACAAGCAT TGACCAGCGA TCCAATTGCG
CTACAAGCTA AAGCTCAACG CGATGCCTTG TATGAACAGA TTGAAGAAAA TCGTGCGCCA
CTACTGCCTA CTATCAGTGC TAATATCGGT TACGATAAAG CTTGGAATGA TCCAAGCGAA
GACAGCAGCG GTATTGTTGG CGGCGTAACG CTTAATCAGG TCATTTACGA TCACAGCGCG
TGGGTAGGCT TAAGCCTAGC AGAAAAAGCA GCTTCTCAAG CAGACTCGGC ATACGCCTCT
GCATTACAGA GCCTGATTAT CCGTGTAACC AATGCTTACT TTGACGTGCT AACAGCCAAA
GATAACTACG AGTTCCAAGG TTCAGAGAAA CGTGCAATTG AGCGTCAGCT TGAGCAGACT
AAGCAACGTT TTGCTGTAGG TCTTACTGCG ATTACCGACG TACATGAAGC GCAAGCGCAA
TATGACTTGG CTAACGCGAC AGAGATCTTA GCCGAAAACA CACTAGCGAA CAGCTACGAA
GCATTACGTG AAATCACGGG TATCGATCAC AAGAGCATCA ATATCCTTGA TACTAACCGT
TTCTCAGCAA CATCGGTTGC ACCAGCGTCT TCATCTGAGT GGATCAAGAT GGCTGAAACC
AACAGTGTTG ACCTGATGAC CACGCGTATC GGTAAAGATA TCGCCGAAGA GACCATTACG
CTTTATAAAG CTGGCCACAT GCCATCGCTA AGCTTAAATG CCGGCTATAA CAAAGGTATT
GAGCAAGAGC CAGGAAACGA CTTTGATAAC GGCACTGTAG GCGTCACCCT AAGCATTCCT
ATCTTTGAAG GCTTCAAGGT TTCTTCTCGT GTAAATCAGG CGCAATACCA ATACGTAGAA
GCAAGCGAGA AGCTTGAACA GACTCACCGC CAAGTAGTTA AAAATGTTCG TAATAACTTT
AACAACGTCG GTGCATCTAT CAGCTCAATC CGTGCTTATG AGCAGTCAGT GATCTCTTCA
GAGAGCGCAT TGAAAGCGAC TCAGGCTGGT TTTGAAGTGG GTACACGTAC CATTGTTGAC
GTATTAAACC GTACACGTGA CCTATACGAT TCAAAGCGTA AGCTGTCTGA TGCACGTTAT
GGCTACATCA ATTCAATCCT AGCGCTTAAA CAAGCTGCGG GTACATTGAA CGAAGATGAT
GTTGCCTCAA TTAACAACGG CCTTGTAGCT CCAACTGCTA ACTAA
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| Protein sequence | MKFKIRSLCA ALTLAATTQV AHADDLLQIY QQALTSDPIA LQAKAQRDAL YEQIEENRAP
LLPTISANIG YDKAWNDPSE DSSGIVGGVT LNQVIYDHSA WVGLSLAEKA ASQADSAYAS
ALQSLIIRVT NAYFDVLTAK DNYEFQGSEK RAIERQLEQT KQRFAVGLTA ITDVHEAQAQ
YDLANATEIL AENTLANSYE ALREITGIDH KSINILDTNR FSATSVAPAS SSEWIKMAET
NSVDLMTTRI GKDIAEETIT LYKAGHMPSL SLNAGYNKGI EQEPGNDFDN GTVGVTLSIP
IFEGFKVSSR VNQAQYQYVE ASEKLEQTHR QVVKNVRNNF NNVGASISSI RAYEQSVISS
ESALKATQAG FEVGTRTIVD VLNRTRDLYD SKRKLSDARY GYINSILALK QAAGTLNEDD
VASINNGLVA PTAN
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