| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3522 |
|---|
| Symbol | |
|---|
| ID | 5663908 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 4305715 |
|---|
| End bp | 4306116 |
|---|
| Gene Length | 402 bp |
|---|
| Protein Length | 133 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641238178 |
|---|
| Product | biopolymer transport protein ExbD/TolR |
|---|
| Protein accession | YP_001503370 |
|---|
| Protein GI | 157963336 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0848] Biopolymer transport protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 45 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTAGCG ATCGATTTAG ACAAGATAAA GATCCTGAAA TCAACATGAC GCCTATGCTT
GATGTGGTGT TTATCTTGCT GATCTTCTTT ATTGTGTCGA CCAACTTTGT GCAGCAATCA
TCTGTCGAGA TCAAGCGCCC TCAAGCCAGC ACGGCCACCA GTGTCGATGG CAGCCCAATT
GTAGTGACAC TTGATACCAC TGGGCGGGTC TATTTTGAAT CCAAAGAGAT TGATATCTAT
TATCTGCCAG GCAAGTTGCA GCAGATTGCC AGTCAAACAC CTAAAGCTAA GTTGTTAGTC
GTAGCTGATA CCAACTGCCC AACAGGGGTA ACGATAAAAG TGCTGGATAT TGCCAAGCAG
GCCGGAATAA GCTTTAGCTC CGTAGCATCA GAGATCCACT GA
|
|---|
| Protein sequence | MLSDRFRQDK DPEINMTPML DVVFILLIFF IVSTNFVQQS SVEIKRPQAS TATSVDGSPI
VVTLDTTGRV YFESKEIDIY YLPGKLQQIA SQTPKAKLLV VADTNCPTGV TIKVLDIAKQ
AGISFSSVAS EIH
|
|---|
| |