| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3361 |
|---|
| Symbol | |
|---|
| ID | 5663748 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 4104098 |
|---|
| End bp | 4105627 |
|---|
| Gene Length | 1530 bp |
|---|
| Protein Length | 509 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641238018 |
|---|
| Product | two component, sigma54 specific, Fis family transcriptional regulator |
|---|
| Protein accession | YP_001503210 |
|---|
| Protein GI | 157963176 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACCA TACTGATTGT CGATGATAAC CAAGCCGTGT GTAATGCCTT AGCGTTAATG
CTAGAGCTGA GCGGTTATCA AACACTTACC TGCTTATCGC CTGACGTCGC CCTCGAACTC
ATCCGGTTGC ATGACGTGGC GCTGGTGATA CAAGATATGA ACTTCACCCA AGACACCACC
TCAGGTGAAG AGGGGCGTAA TCTATTTTAT GGCTTTAGAC AGCTGCAGCC AGAGCTGCCT
ATCATATTGC TCACCGCTTG GACCCAGCTT GAACTTGCCG TGGAGCTAGT CAAAGAGGGC
GCCGCCGATT ACATGGGCAA ACCTTGGGAT GATGCCAAGT TGCTCAACAG CATCAGCAAC
CTTATTTCAC TGCATCGACT GTCTAAGAAA AATGCTCAGT TAAGCCGAGT TGAAAGCCAG
CGTATGGTGG CCATTAAAGA CGCGGAACTG TGTGGTATCG TTTTTAACAG TGGCGCCATG
CAGCGCTGTG TGGATTTAGC CCTGCAGATC GCAAAATCTG ATGTGTCGGT GTTGATTACA
GGCCCCAACG GCGCGGGTAA GGATAAATTA GCCGATATCA TTCACGCTAA TTCTCCCTTG
AGGTACAAGC CCTTTATCAA GGTCAATATT GGCGCGTTGC CGATGGATTT GCTTGAAGCG
GAGCTGTTTG GCGCTGAGGC AGGCGCTTAT ACTGGCGCAA CTAAGGCTCG TATTGGACGA
TTTGAAGCGG CCGATGGCGG TACATTGTTT TTAGATGAGA TAGGTAATTT ACCACTTTCT
GGGCAGGTGA AGTTACTGCG AGTATTGCAA ACCGGTGAGT TTGAGCGACT CGGTAGCCAT
CAAACCCGCA GAGTCAATGT TCGAGTGGTA AGTGCCACTA ATGCTGACTT GGCACAAGAT
ATTCAAGCTG GGCGTTTTCG TGAGGATCTG TTCTACCGCC TCAATGTGAT TGAGTTAGCC
TTGCCTGCAC TTAATGAGCG TAAAGATGAT GTATTGCCGT TGGTTGAACA CTTTATTGGC
ACCGACTTTT CACTGTTGCG CCAGACTCAG CAGGCGTTGG TGGCACACTC ATGGCCAGGT
AACGTGCGCG AGCTAGAAAA TGCCTGTAAG CGAGCGGTGA TATTAGCCAA TTCCCCTGAG
CTAACCGTCG AGGATTTTGG GCTCGTAATT CATACCAGTA TGGCTGAGCC CGTCTCTACT
TCTGCGACTA ATGATGCAAC TAATCCAGTT ACTAGCTCTG TCACAAACTT TGTTGCAGGG
GCTTTAGTTG AAAAGTCAGC AAGCCCTCAA ACTCAAACGT ACGCTTCAGC TAAGCATTCT
TCGGCGGAGC CGATGAGTAA CCCCGAAGCG AGTAATAATG AGTCGAGTAA TACTGAACAG
AGTTGCACAG AGACGCCACA AGCTGAAAAA GCCAATATTG AAGCGGCGCT CGACCAGCAT
AGAGGCGTGA TAGCTCGTGT CGCTAAGGCT CTGGGCTTAA GTCGACAAGC CTTATATCGG
CGCATGGACA AGTATGGGAT TGATAAGTAA
|
|---|
| Protein sequence | METILIVDDN QAVCNALALM LELSGYQTLT CLSPDVALEL IRLHDVALVI QDMNFTQDTT
SGEEGRNLFY GFRQLQPELP IILLTAWTQL ELAVELVKEG AADYMGKPWD DAKLLNSISN
LISLHRLSKK NAQLSRVESQ RMVAIKDAEL CGIVFNSGAM QRCVDLALQI AKSDVSVLIT
GPNGAGKDKL ADIIHANSPL RYKPFIKVNI GALPMDLLEA ELFGAEAGAY TGATKARIGR
FEAADGGTLF LDEIGNLPLS GQVKLLRVLQ TGEFERLGSH QTRRVNVRVV SATNADLAQD
IQAGRFREDL FYRLNVIELA LPALNERKDD VLPLVEHFIG TDFSLLRQTQ QALVAHSWPG
NVRELENACK RAVILANSPE LTVEDFGLVI HTSMAEPVST SATNDATNPV TSSVTNFVAG
ALVEKSASPQ TQTYASAKHS SAEPMSNPEA SNNESSNTEQ SCTETPQAEK ANIEAALDQH
RGVIARVAKA LGLSRQALYR RMDKYGIDK
|
|---|
| |