| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3206 |
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| Symbol | |
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| ID | 5663595 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 3930329 |
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| End bp | 3932182 |
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| Gene Length | 1854 bp |
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| Protein Length | 617 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641237865 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_001503057 |
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| Protein GI | 157963023 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | [TIGR01779] TonB-dependent vitamin B12 receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00965358 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGAACAC AACCCTCTAA AATTGCACTG CTAATTAGCA GTCTTATCAG CTTTACTGCA
TTCACAGCGA CCGCCGAAGA TCTCGGAGCA AGCTCAGCGA CAATCGATGA AACGATTACT
GTAACAGGAT CACGTTTTGA CAGAACGGTA GATCAGCAAC TGACAGTTAT CAATACGATT
GAGCGTGAAG AAATCGCGCG TCTTAACCCT AAATCGGTTG CCGATGTACT AGAAACGCTT
CCTGGCGTCA GTGTATCTCG CAATGGTGGT GCGGGTCAGG CTACTTCTAT TAGTGTTCGC
GGTAGTAATT CAAATCATGT TCTAGTGCTA GTTGACGGCG TAAAGGTTGG CTCTGCAACC
TTAGGTACTG TCAGTTTTAA TACCCTATCT CCTGAGAACA TCGAGCGTAT AGAAGTGCTT
AAAGGTCCGC GGGCGTCTGT ATGGGGCAGC GATGCTATAG GCGGCGTTAT TCAAATATTT
ACCCGTGAGC TTAAAGGTGG CGAGTGGTTT GCTGGTGCCG AATATGGCAG CAATGACTAT
GTTCGAGGCT CATTTGGCGC AGGCATGAAT CATGGCGACG GAAACACCAC ACTTGCCGTT
AACCATGAAC AGTCTGACGG CTATGATGTA TATAATGGCG CCGAAGTCGA GAACGATGAC
GACGGTTACA AGCGTAATGC GCTTTCATTG AAAGGGTCGC AGCAAATTAA TCAAAACTGG
CAAGCACTTT GGAATGGCCA GTACGATAAG GGCAATACCC AATACGATGA CATCTACGCC
TCAGGTTCGG CCGATGAGTC AGATTATGAA AACTATCTTT GGAGTCTTGC TACCCAGTAC
AGTCGTGAGC AGTTCACTAG CAAGTTAGCC GTGAGTCAAT CACAAGATTC AAATGAAAAT
TTCCGCGGTG ATGATGCGAG TGTTGCCATT GCAGAGTTTG AAACTAAGCG CGATCAAGTT
AACTGGAGCA ATCAGTATTT AGCGGCAGAT GATCTGACTA TTACCGGCGG TATTGACTGG
TCAAGAGAGC AGGTCAGAGG CGACTACGCC CAAGACGAGC GAGACCTTTT CGGCGCATAC
GCATTAATCC AGAAGCAATG GAGCAAGTTG CTAGCCGAAG TGGCTGTACG CTACGATGAT
GTGGAAAATA TCGATAGCGA AACTTCCTAT AATGCCAGTT TAGCCTATCA GTTTAATGAA
CAATGGCGAA TAGCAGCGAC CACGGGCACG GCTTTTAAGG CGCCAACCTT TAACGATCTA
TACTGGCCTG ACTCTGGTAA CTCTGACTTG ATCTCAGAAA CGGCAGAGAG TTATGAGCTG
ACGCTGCATT TTAATAATCA AGATCTTCGC GCCTATATCA GTGTGTTCCA GAATAAGATT
GATAACCTTA TTGCCTGGGC ACCAACTGGT GAGCAAGATG ATTTTGGTTG GGATATCTGG
AAGCCTGCGA ACATCAATGA AGCTAAGATC ACAGGTGTAG AGCTTTCGGC AAATTATCAA
CTGTTAGGGC TAGAACATCA GCTGGGTTAC ACCTACCTAA ATGCAGAAAA CAAGCAAACT
GATGAACAAC TTATCGGTCG CAGTGAGAAT GAGTTCAACT ATTTACTGAG CTACACTTGG
CAGCAGTTTG ATCTACTTGC TAACTATCAT TATCAAGGTA AGCGTTATGC TGGCTATGAG
CAGTACTTAG ATGCCTATCA TAAGCTCGAT TTGAGTTTGG GTTTCCAGAT TGATGATGCA
TGGAGCCTAC GCTTAAAGGC GAACAACCTG TTTGATGAAG AGATTATCTC AGATCAGAAC
TACTTTAGCC CTGGAAGAGA GTTATTCTTC AGCGTTAGCT ACCAAGCGTT TTAA
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| Protein sequence | MGTQPSKIAL LISSLISFTA FTATAEDLGA SSATIDETIT VTGSRFDRTV DQQLTVINTI
EREEIARLNP KSVADVLETL PGVSVSRNGG AGQATSISVR GSNSNHVLVL VDGVKVGSAT
LGTVSFNTLS PENIERIEVL KGPRASVWGS DAIGGVIQIF TRELKGGEWF AGAEYGSNDY
VRGSFGAGMN HGDGNTTLAV NHEQSDGYDV YNGAEVENDD DGYKRNALSL KGSQQINQNW
QALWNGQYDK GNTQYDDIYA SGSADESDYE NYLWSLATQY SREQFTSKLA VSQSQDSNEN
FRGDDASVAI AEFETKRDQV NWSNQYLAAD DLTITGGIDW SREQVRGDYA QDERDLFGAY
ALIQKQWSKL LAEVAVRYDD VENIDSETSY NASLAYQFNE QWRIAATTGT AFKAPTFNDL
YWPDSGNSDL ISETAESYEL TLHFNNQDLR AYISVFQNKI DNLIAWAPTG EQDDFGWDIW
KPANINEAKI TGVELSANYQ LLGLEHQLGY TYLNAENKQT DEQLIGRSEN EFNYLLSYTW
QQFDLLANYH YQGKRYAGYE QYLDAYHKLD LSLGFQIDDA WSLRLKANNL FDEEIISDQN
YFSPGRELFF SVSYQAF
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