| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3126 |
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| Symbol | prfA |
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| ID | 5663515 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 3828949 |
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| End bp | 3830034 |
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| Gene Length | 1086 bp |
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| Protein Length | 361 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641237766 |
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| Product | peptide chain release factor 1 |
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| Protein accession | YP_001502977 |
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| Protein GI | 157962943 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0216] Protein chain release factor A |
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| TIGRFAM ID | [TIGR00019] peptide chain release factor 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.000819953 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAGGACA GTGTGATTCG TAAGCTTGAA GGCTTACTTG AACGTAATGA AGAAGTGTTG
GCGTTACTGA GTGATGCAGG CGTTATTGCC GATCAGGAAC GTTTCCGCGC CTTGTCTAAA
GAATATTCTC AACTAGAGGA TGTAGTCAGT ACCTTTAAGT CTTTTCAGCA AGCCGAGGAA
GATCTCGAGT CAGCTAAAGA GATGATGGAA GAGGATGACC CAGAGCTTAA AGAGATGGCT
CAGGAAGAAT ATAAAGTCGC TAAGTCGGCG ATAGCAGCGC TTGAAGATGA GTTGCAGATC
TTATTGCTTC CAAAAGATCC GAATGACGAC AATAACTGTT TTATCGAAAT CCGCGCTGGC
GCGGGTGGTG ATGAAGCGGC TATTTTTGCG GGTGATTTGT TCCGCATGTA TAGCAGATAC
GCCGAAAGTA AGCGCTGGCA GATAGAAGTT ATGAACACCA ACGAAGGTGA GCATGGCGGC
TTTAAAGAAG TGATCGCTAA AATCAGTGGC GAAGGTGTTT ACGGTAAGCT GAAATTTGAA
TCTGGCGGAC ACCGTGTACA ACGTGTACCT GAGACCGAGT CTCAAGGCCG CGTACATACT
TCAGCTTGTA CTGTGATTGT ACTGCCTGAA GTACCAGAAG CAGAAGCGAT TGAAATTAAC
AAGGCCGACT TGAAAGTGGA TACTTTCCGC GCATCAGGTG CTGGTGGACA GCACGTTAAC
AAAACTGACT CAGCTATTCG TATTACCCAT ATTCCAACAG GTATCGTTGT AGAGTGTCAG
GATCAGCGTT CACAGCATAA AAACCGTGCC CAAGCGATGA GCGTGCTTGC CGCGCGTATC
CAAGCTGTTG AAGACGAGAA GCGTCGTAGT GCTGAAGAAA GTACACGCCG TAACTTGGTG
TCATCAGGTG ATCGTTCAGA ACGTATTCGT ACTTATAACT TCCCACAAGG TCGTGTAAGT
GAGCACAGAA TTAACTTAAC TCTGTACCGC TTAGGCGAAT TTATGGAAGG TGACATCGAT
TGTGTTGTAG AACCACTGAT CCAAGAAAAC CAAGCGGATA TGCTTGCAGC ACTGGGTGAA
GGCTAA
|
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| Protein sequence | MKDSVIRKLE GLLERNEEVL ALLSDAGVIA DQERFRALSK EYSQLEDVVS TFKSFQQAEE
DLESAKEMME EDDPELKEMA QEEYKVAKSA IAALEDELQI LLLPKDPNDD NNCFIEIRAG
AGGDEAAIFA GDLFRMYSRY AESKRWQIEV MNTNEGEHGG FKEVIAKISG EGVYGKLKFE
SGGHRVQRVP ETESQGRVHT SACTVIVLPE VPEAEAIEIN KADLKVDTFR ASGAGGQHVN
KTDSAIRITH IPTGIVVECQ DQRSQHKNRA QAMSVLAARI QAVEDEKRRS AEESTRRNLV
SSGDRSERIR TYNFPQGRVS EHRINLTLYR LGEFMEGDID CVVEPLIQEN QADMLAALGE
G
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