| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3074 |
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| Symbol | carB |
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| ID | 5663464 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 3769661 |
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| End bp | 3772882 |
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| Gene Length | 3222 bp |
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| Protein Length | 1073 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641237715 |
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| Product | carbamoyl phosphate synthase large subunit |
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| Protein accession | YP_001502926 |
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| Protein GI | 157962892 |
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| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
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| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
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| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.581012 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAAAAC GTACAGATAT AAAGAGTATT CTTATCCTAG GTGCTGGACC GATTGTAATT
GGTCAAGCCT GTGAGTTTGA CTACTCAGGC GCCCAAGCCT GTAAAGCCCT ACGCGAAGAA
GGCTACCGAG TTATTCTTGT TAACTCAAAC CCTGCAACCA TTATGACTGA CCCAGAGATG
GCCGATGCGA CTTACATCGA ACCTATTCAC TGGGAAGTAG TACGTAACAT TATTGCCAAA
GAGCGTCCTG ATGCGATTTT GCCAACCATG GGCGGCCAAA CAGCACTTAA CTGTGCGCTT
GAGCTTGAAA GCCGTGGTGT ACTAAAAGAA TTCAATGTTG AAATGATTGG CGCAACAGCC
GATGCAATCG ACAAAGCTGA GGACCGTAGC CGTTTCGATA AGGCAATGAA GTCGATTGGC
CTTGAGTGTC CTCGTGCTGG TATCGCGCAC AACATGGATG AAGCCCGCGC TGTTCAAGCA
GAAGTTGGCT ACCCGTGTAT TATCCGTCCG TCATTCACTA TGGGTGGCAG CGGCGGTGGT
ATCGCTTATA ACAAAGAAGA GTTTGAGGAT ATCTGTTCTC AAGGTCTTGA GCTATCACCC
ACTAGCGAAC TGCTTATCGA CGAATCTTTG ATTGGTTGGA AAGAGTACGA GATGGAAGTG
GTACGTGACC GCAACGATAA CTGTATTATC GTCTGTGCAA TCGAAAACTT TGACCCAATG
GGCGTTCACA CTGGTGACTC AATTACGGTT GCACCAGCAC AAACCCTAAC TGACAAAGAA
TACCAATTGA TGCGTAATGC ATCACTTGCA GTATTGCGTG AGATTGGTGT TGAAACTGGC
GGTTCAAACG TACAGTTTGG TATTAATCCT GTTGATGGCC GTATGGTTAT CATCGAGATG
AACCCTCGTG TATCACGTTC TTCTGCACTA GCATCGAAAG CAACCGGTTT CCCGATTGCA
AAGATTGCAG CCAAGCTAGC GGTTGGCTTC ACTCTCGATG AGCTTAGCAA CGACATTACC
GGCGGTGCAA CTCCAGCATC ATTTGAGCCT GCAATCGATT ACGTTGTAAC TAAAATCCCG
CGTTTTAACT TTGAAAAGTT TGCTGGTGCT AATGACCGTC TAACTACACA GATGAAGTCT
GTGGGTGAAG TGATGGCGAT TGGCCGTACA TTCCAAGAGT CACTACAAAA AGCCCTTCGT
GGACTTGAAG TGGGTAAAAA TGGTTTATGC CCAGAAATCG ACTTGGCAGA ACCAGAAGCA
TTATCACGTA TTCGTCACGA GCTTAAAGAG CCGGGCGCAG AACGTATTTG GTATATTGCT
GATGCATTCC GTGCGGGTCT GTCGGTTGAT GATATCTTTG GCTTAACTAA TATTGACCCT
TGGTTCCTTG TGCAGCTTGA AGACTTGCTT AAGTCTGAAG CGCAAGTCGC TGAAATCGGT
CTTGCTGGAT TAAGTGAAGA CGTTCTACGC AAGCTTAAGC GCAAAGGTTT TGCCGATTCT
CGTTTAGCTG CACTAGCTGG TGTGAGCGAG ACTGAAGTGC GTAAGCTGCG TACTCGTTTT
GAAATTCACC CAGTGTATAA GCGTGTTGAT ACCTGCGCGG CTGAATTCTC AACAGATACG
GCTTACATGT ACTCAACTTA TGAAGATGAG TGTGAAGCGA ATCCATCAAA TCGTGACAAG
ATCATGATTT TAGGTGGTGG TCCAAACCGT ATTGGCCAAG GTATTGAGTT TGATTACTGT
TGTGTACATG CAGCATTGGC GCTACGTGAA GACGGGTACG AGACCATCAT GGTTAACTGT
AACCCTGAAA CCGTTTCTAC CGACTACGAC ACATCAGATC GTCTGTACTT CGAGTCAGTA
ACTTTTGAAG ATGTGCTTGA AATCGTACGT ATCGAAAAGC CAAAAGGCGT TATCGTGCAG
TACGGTGGTC AAACACCGCT TAAACTAGCA CGCGACCTTG AAGCCGCTGG CGTACCAATT
ATTGGTACTA GCCCTGATGC AATTGACCGT GCTGAAGACC GTGAGCGTTT CCAGCAAGCA
ATTCAGCGTT TAGGCATGAT GCAGCCAGAA AATGATACGG TAACAACCGT AGAAGGCGCA
GTGATCTCAG CTGAGCGTAT TGGTTATCCG TTAGTGGTTC GTCCATCTTA TGTTTTAGGT
GGCCGTGCAA TGGAAATCGT TTATGACGAG CAAGATTTAC GTCGCTACTT TAATGAAGCG
GTAAGTGTTT CTAACGCGTC TCCAGTGCTA CTTGACCGTT TCCTAGACAA CGCAATCGAA
ATCGACATCG ACGCAGTATG TGATGGCGAA ACGGTTGTGA TTGGCTCAAT CATGGAACAT
ATCGAGCAAG CGGGTGTTCA CTCTGGTGAC TCTGGTTGTT CATTGCCTCC ATATAGCCTA
AGCCAAGACA TTCAAGACCG CATGCGTGAG CAGGTGGGTA AGCTTGCAAT GGAGCTAGGC
GTAATTGGTC TGATGAACGT ACAGTTTGCA GTGAAGGATA ACGAGATCTA CATGATCGAA
GTTAACCCAC GTGCAGCGCG TACCGTACCA TTTGTATCGA AGGCGACTGG CGTTCCATTA
GCTAAGATTG CCGCGCGTGT GATGGCGGGT CAAAGCCTTA AATCACAGAA CTTCACCGAA
GAAGTTATTC CGCCATTCTA CTCTGTAAAA GAAGTGGTAT TGCCGTTTAA CAAGTTCCCA
GGTGTTGACC CATTGCTTGG CCCTGAGATG CGATCAACGG GTGAGGTTAT GGGTGTGGGT
GATACGTTTG CTGAAGCCTA TGCTAAAGCG CAGTTAGGTG CGACATCTGA AGTGCCTAAG
TCTGGCCGTG CACTCTTGTC TGTTCGTAAC AGCGATAAGG CTCGTGTTGC CGATTTAGCC
GCGCAATTAA TTGCATTGGG TTATCAGATT GACGCAACAC ACGGTACTGC GGTTATCTTA
GGCGAAGCGG GTATTAACCC ACGTCTAGTG AACAAGGTAC ACGAAGGTCG TCCTCATATT
CTTGACCGTA TCAAGAACGG TGAGTACACC TATATCGTTA ACACGACAGA AGGTCGTAAG
GCGATTGAAG ATTCACGTCA GCTACGTCGT GGTGCACTGC GTTACAAGGT GAACTACACA
ACGACTTTGA ATGCTGCCTT TGCAACTTGT ATGGCTCACT CGGCGGATGA CCGCTCGAAC
GTGACGTCAG TACAAGAGCT GCATAAGCGT ATTACTAAGT AA
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| Protein sequence | MPKRTDIKSI LILGAGPIVI GQACEFDYSG AQACKALREE GYRVILVNSN PATIMTDPEM
ADATYIEPIH WEVVRNIIAK ERPDAILPTM GGQTALNCAL ELESRGVLKE FNVEMIGATA
DAIDKAEDRS RFDKAMKSIG LECPRAGIAH NMDEARAVQA EVGYPCIIRP SFTMGGSGGG
IAYNKEEFED ICSQGLELSP TSELLIDESL IGWKEYEMEV VRDRNDNCII VCAIENFDPM
GVHTGDSITV APAQTLTDKE YQLMRNASLA VLREIGVETG GSNVQFGINP VDGRMVIIEM
NPRVSRSSAL ASKATGFPIA KIAAKLAVGF TLDELSNDIT GGATPASFEP AIDYVVTKIP
RFNFEKFAGA NDRLTTQMKS VGEVMAIGRT FQESLQKALR GLEVGKNGLC PEIDLAEPEA
LSRIRHELKE PGAERIWYIA DAFRAGLSVD DIFGLTNIDP WFLVQLEDLL KSEAQVAEIG
LAGLSEDVLR KLKRKGFADS RLAALAGVSE TEVRKLRTRF EIHPVYKRVD TCAAEFSTDT
AYMYSTYEDE CEANPSNRDK IMILGGGPNR IGQGIEFDYC CVHAALALRE DGYETIMVNC
NPETVSTDYD TSDRLYFESV TFEDVLEIVR IEKPKGVIVQ YGGQTPLKLA RDLEAAGVPI
IGTSPDAIDR AEDRERFQQA IQRLGMMQPE NDTVTTVEGA VISAERIGYP LVVRPSYVLG
GRAMEIVYDE QDLRRYFNEA VSVSNASPVL LDRFLDNAIE IDIDAVCDGE TVVIGSIMEH
IEQAGVHSGD SGCSLPPYSL SQDIQDRMRE QVGKLAMELG VIGLMNVQFA VKDNEIYMIE
VNPRAARTVP FVSKATGVPL AKIAARVMAG QSLKSQNFTE EVIPPFYSVK EVVLPFNKFP
GVDPLLGPEM RSTGEVMGVG DTFAEAYAKA QLGATSEVPK SGRALLSVRN SDKARVADLA
AQLIALGYQI DATHGTAVIL GEAGINPRLV NKVHEGRPHI LDRIKNGEYT YIVNTTEGRK
AIEDSRQLRR GALRYKVNYT TTLNAAFATC MAHSADDRSN VTSVQELHKR ITK
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