| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_3056 |
|---|
| Symbol | |
|---|
| ID | 5663446 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 3749052 |
|---|
| End bp | 3751091 |
|---|
| Gene Length | 2040 bp |
|---|
| Protein Length | 679 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641237695 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_001502908 |
|---|
| Protein GI | 157962874 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.029022 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACAGTT TCAAATCACT GACATGGAAG CAGACTATCT TAGTGGTTTC TTCCACACTT
TTTTTCGCCG TTGTGATCTT TTTTATTGAG ATATCTCTCC TCGTTATCGA TGCTCGCCAA
GAGCTTTCGG AAAGCCAACA AGAACTCGTC GACTCAGTTG AACAGCCAGC GACCAATGCG
ATCTGGGCAT TAGATGATTT ACGTGCTGAA CAAACCATTC AAGGGATCTT AAAAGTAGAG
CATGTAGGCT CGGCGATATT AAAACTTGAA GATGGTAGCC GTTTCGTATC AGTTAATAAT
GGTGCCCCAT CCGTTAATCC TGAGCTTTTT ACCTCAATCA GTGCCAAACT CTTTGGCGAC
CTAAAACAGA TCTCTCGCTC GCTGTACCGC CCTTTTTATA CCGATGCTAA TGGTAATAAA
GAACTTATCG GCAGCCTAAC CGTTTTCTAT TACACTCAAG AGCTAACCAG CTCTTTATTT
TCTAGCCTTA GATTCAGCCT TTGGGCAACT CTTGCGAGAG CCTTCCTGCT AACGCTTGTT
CTGTCTATTG TGTTCCATCG TTTTCTTACC CAGCCGATAG CGAAAATAAG CGAAGCTATC
GACAGAATCG ATCCCGAATC CCCTGCGAAT CACTTGCTTC CACCTGACCG TGCTCATAAT
GATGACGAAC TCGGGGCGGT TATCTCCAAG CTCAATCAGA TCTTGATTCA ATTCGACACG
ACTCAGACTA AGCTACGCAA GATGGCGACA CGGGACCCCC TGACTGAATT GCCTAATCGC
ACTTTATTGC TTGAAACTAT TGCGGTTACC ATCCAAAGAG CAAAGACCAA ACAGAGACGT
TTCAGCTTGC TGTTCATTGA CCTAGACCGT TTTAAAAACG TTAACGATTC ATTGGGACAT
GAAGTTGGCG ACCAATTTTT AATACGAGTC GCGCGTAACC TAGAGTTAAC CGTTGGCCAG
ATAGGTACGG TCGCAAGGCT TGGAGGCGAT GAATTTGTGG TATTAGCGGA TGGTTTAGAC
TCCCCCACAA AAGCGGTCGA GTTGGTCGAT AAGTTACTGG TTCAACTGAA CACGCCTATG
CAACTCAATG AGCATACTGT GCACCCTGCA GCCTCAATCG GTATCGCAAT CTATCCCGAT
GACGGCCTTC GAGCCGAAGA CCTTATTCGC CATGCCGATA TCGCCATGTA CAGCGCAAAA
GCCGCTGGCT CAAACCAATG GGCATTCTTT AAACCTCAAA TGACCGAACG TGCTTCAGTA
CGTTTAAGAA CTGAGGCTTC GTTACATGAT GCGCTTGAGA ACAATGAATT CATATTACAT
TTTCAGCCAA AACTAGATAT AGAAACCGGT GCAGTGGTTG GTTGCGAAGC CCTTATCCGC
TGGCAAAAGG ATGGCCGTTT AATAAGTCCA GCCTCTTTTA TTCCTGTGGC GGAAGAAACT
GGTATGATTA TTCAAATAGG CCAATGGGTT GTCGAGCAAA GTTGCAAAAC CATCAAAGAC
TGGAAAACTC GCTATAACTT TTCGGTGCCA ATTGCCATTA ATGTCTCATC ACAGCAGTTT
TTAGATGCCA GCCTAGTCCC CGATATAAAA CAGGCGGCAC TGCGTTATCA AGTAGCTCCT
CAATCACTGG AAATAGAGAT CACTGAAACT TCTCTGATGA ATGACATAGA GTCCGCAATT
ATAAAGCTTC AACAGTTAAA GTCCGCAGGT TTTGGCATTG CTGTAGACGA TTTTGGTACA
GGTTATTCTT CTCTTTCTTA CCTACGGCGT CTGCCAATAA GCACCATGAA GATTGATCGT
GGTTTTGTAT CTGATCTGCC TGAAGAGAGT GCAATCGCAT CGACTATTTT AATGCTTGGC
AAGCAACTTG ATTTAAACAT TGTCGCCGAG GGAGTTGAGA ATGAGCAGCA GCTTGCTTGG
TTACAAAACC AAGGCTGTCA GATAGGACAA GGGTTTTACT TTAGTAAGCC TCTACCAATA
GAATCGTTTG AAGCCAAGTA CATTGCTCCA AATCGTAACA CCATAAAAAC CAGCAGCTAG
|
|---|
| Protein sequence | MDSFKSLTWK QTILVVSSTL FFAVVIFFIE ISLLVIDARQ ELSESQQELV DSVEQPATNA
IWALDDLRAE QTIQGILKVE HVGSAILKLE DGSRFVSVNN GAPSVNPELF TSISAKLFGD
LKQISRSLYR PFYTDANGNK ELIGSLTVFY YTQELTSSLF SSLRFSLWAT LARAFLLTLV
LSIVFHRFLT QPIAKISEAI DRIDPESPAN HLLPPDRAHN DDELGAVISK LNQILIQFDT
TQTKLRKMAT RDPLTELPNR TLLLETIAVT IQRAKTKQRR FSLLFIDLDR FKNVNDSLGH
EVGDQFLIRV ARNLELTVGQ IGTVARLGGD EFVVLADGLD SPTKAVELVD KLLVQLNTPM
QLNEHTVHPA ASIGIAIYPD DGLRAEDLIR HADIAMYSAK AAGSNQWAFF KPQMTERASV
RLRTEASLHD ALENNEFILH FQPKLDIETG AVVGCEALIR WQKDGRLISP ASFIPVAEET
GMIIQIGQWV VEQSCKTIKD WKTRYNFSVP IAINVSSQQF LDASLVPDIK QAALRYQVAP
QSLEIEITET SLMNDIESAI IKLQQLKSAG FGIAVDDFGT GYSSLSYLRR LPISTMKIDR
GFVSDLPEES AIASTILMLG KQLDLNIVAE GVENEQQLAW LQNQGCQIGQ GFYFSKPLPI
ESFEAKYIAP NRNTIKTSS
|
|---|
| |