Gene Spea_3055 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_3055 
Symbol 
ID5663445 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand
Start bp3746741 
End bp3748855 
Gene Length2115 bp 
Protein Length704 aa 
Translation table11 
GC content45% 
IMG OID641237694 
Productpolynucleotide phosphorylase/polyadenylase 
Protein accessionYP_001502907 
Protein GI157962873 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) 
TIGRFAM ID[TIGR03591] polyribonucleotide nucleotidyltransferase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value4.45882e-07 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTTCACG TGAATCCAAT CGTAAAGAGT TTTCAATATG GTCAGCACAC AGTCACATTA 
GAGACTGGGG TTATTGCACG TCAAGCAGAT GCAGCTGTTT TGGCAAGTAT GGGTGATACA
ACAGTATTGG TTACTGTTGT TGGCAAGAAG TTTGAAGAGC CAGGCCGTGA CTTTTTCCCG
CTAACCGTTA ATTACCAGGA AAAAACATAC GCAGCAGGTA AGATCCCTGG TGGATTCTTT
AAGCGTGAAG GTCGTCCATC TGAAGGCGAA ACGCTTACAG CTCGTCTAAT TGACCGTCCA
ATCCGTCCAC TATTCCCGAA TGGTTTCAAG AACGAAGTTC AGGTTATCAT TACAGTAGTT
TCTGTTGATC CAGAAATCAG CCCAGAAGTT ATCTCTATGA TCGGTACTTC AGCTGCACTT
TCTATCTCTG GTATTCCATT TAATGGTCCA CTAGGTTCAG CGCGTGTTGG TTATGTTAAT
GGTGAATATA TCCTTAACCC AACAGTTTCT CAGCTAGTTG ATAGCCAGCT AGAGCTTTCT
GTTGCTGGTA CTGAAAGTGC AGTACTAATG GTTGAATCAG AAGCAAGCGC ACTACCTGAA
GAAGTGATGT TAGGTGCGGT TGTTTATGGT CACGATCAGC AGCAAGTGGT TATTCAAGCA
ATTAAAGAGC TACAAGCTGA AGTTAACAAG CCTGTATGGG ATTGGTCTGC ACCTGCGCAA
GACGAAACGC TTGTTGCTAA GATCAAAGAT TTGGCTGAAG CAGGTCTTAC TGAAGCTTAC
CAAATTGAAG TTAAGCAAGA TCGTTACGCT CAAGTTGGTG TAGTTAAGAA TGCTGCTAAA
GAAGCATTAT TGGCTGAAAA CCCAGATGCT AACACACGTG AAATCGACGG TCTTCTAGGT
AGCCTAGAGA AGAAAGTGGT TCGTGGCCGT ATTATCTCTG GTCAGCCACG TATCGATGGT
CGTGAGCCAG ATATGGTTCG TGCACTTAAC GTTATGGCTG GTGTACTTCC ACGTACTCAC
GGTAGCTCAC TGTTCACTCG TGGTGAAACT CAGGCGCTAG TAACTTGTAC TCTTGGTACA
GAGCGTGATG CACAGAAGAT TGATAGCATC ATGGGCGAGT ACACTAACCG CTTTATGCTT
CACTACAACT TCCCTCCATA CTCTGTTGGT GAAACAGGCA TGGTTGGTTC TCCTAAGCGT
CGTGAAATTG GTCACGGTAA GCTAGCATGG CGTGGTATTA ACGCGGTTAT GCCTACTGCT
GAAGAGTTCC CATACAGCGT TCGTATCGTA TCTGAAATCA CTGAATCTAA CGGTTCAAGC
TCTATGGCGT CAGTTTGTGG TACTTCTCTT GCTCTTATGG ATGCAGGTGT ACCAATCAAG
ACTTCTGTTG CGGGTATCGC GATGGGTCTA GTTAAAGAAG GCGACGATTT CGTTGTTCTT
TCTGACATCC TAGGCGATGA AGATCACCTT GGTGACATGG ACTTTAAAGT TGCGGGTACT
CGCGACGGTA TTACTGCTCT GCAGATGGAT ATCAAGATCG AAGGTATCAC TAAAGAGATC
ATGCAGATTG CTCTTAAGCA AGCATACGGC GCTCGTGTTC ATATCCTAGA CGTAATGGAT
AGGGCTATCT CTGGCCACCG TGGTGATATT TCTGAGCATG CTCCACGTAT CACAACTATC
AAGATCAACC CTGAGAAGAT CCGTGATGTT ATTGGTAAAG GTGGTGCAAC AATTCGTGCA
CTTACTGAAG AAACCGGTAC GACTATCGAA CTTGATGACG ACGGTACAGT GAAGATTGCT
TCTTCAAATG GCGAAGCGAC TAAAGAAGCT ATCCGTCGTA TCGAAGAGAT CACTGCAGAA
GTTGAAGTCG GTACTGTATA CAACGGTAAA GTTGTTCGTA TCGTAGATTT TGGTGCATTC
GTAACAATTC TTCCTGGTAA AGATGGTCTA GTACACATTT CTCAAATCGC TGAAGAGCGT
GTTGCGAACG TGTCTGACTA CTTAGAAGTA GGTCAAGAAG TTAAAGTTAA AGTGATGGAA
GTTGACCGTC AAGGCCGTGT ACGTCTTTCT ATGAAAGAAG CTGCACCTAA AGCCGAAGCG
CCAGCTGCTG AATAA
 
Protein sequence
MVHVNPIVKS FQYGQHTVTL ETGVIARQAD AAVLASMGDT TVLVTVVGKK FEEPGRDFFP 
LTVNYQEKTY AAGKIPGGFF KREGRPSEGE TLTARLIDRP IRPLFPNGFK NEVQVIITVV
SVDPEISPEV ISMIGTSAAL SISGIPFNGP LGSARVGYVN GEYILNPTVS QLVDSQLELS
VAGTESAVLM VESEASALPE EVMLGAVVYG HDQQQVVIQA IKELQAEVNK PVWDWSAPAQ
DETLVAKIKD LAEAGLTEAY QIEVKQDRYA QVGVVKNAAK EALLAENPDA NTREIDGLLG
SLEKKVVRGR IISGQPRIDG REPDMVRALN VMAGVLPRTH GSSLFTRGET QALVTCTLGT
ERDAQKIDSI MGEYTNRFML HYNFPPYSVG ETGMVGSPKR REIGHGKLAW RGINAVMPTA
EEFPYSVRIV SEITESNGSS SMASVCGTSL ALMDAGVPIK TSVAGIAMGL VKEGDDFVVL
SDILGDEDHL GDMDFKVAGT RDGITALQMD IKIEGITKEI MQIALKQAYG ARVHILDVMD
RAISGHRGDI SEHAPRITTI KINPEKIRDV IGKGGATIRA LTEETGTTIE LDDDGTVKIA
SSNGEATKEA IRRIEEITAE VEVGTVYNGK VVRIVDFGAF VTILPGKDGL VHISQIAEER
VANVSDYLEV GQEVKVKVME VDRQGRVRLS MKEAAPKAEA PAAE