Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_2879 |
Symbol | |
ID | 5663270 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | - |
Start bp | 3517781 |
End bp | 3518971 |
Gene Length | 1191 bp |
Protein Length | 396 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641237519 |
Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
Protein accession | YP_001502732 |
Protein GI | 157962698 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00000000344677 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCAAAATA TGGTGATTTT AGGCGCAACA GGCTCCATTG GTGCAAGCAC CTTGAATGTT GTGGCGTGTA ATCCTGAGCA GTACAAGGTT TTTGCGTTAG TGGCAAATAC TAATGTCGCC AAAATGCTAG AGATCTGTAT TGCGCATCAG CCTAAGATTG CCCATATGGT CGATGCAAAA GCGGCTCAAG CGCTCAAGCA GCAACTTCCA AGTCATCTCA AAATTGAAGT GACTACTGGT GAAGATGAGC TGTTGTCTCT TGTGAGCTGC AGTGAGGTTG ATACCGTGAT GGCGGCCATT GTCGGCGCCG CGGGTCTACC TTCAACTCTC GCCGCGGTTA ATGCGGGTAA ACGAGTATTG CTGGCTAACA AAGAATCGTT AGTCATGTCT GGCCAGCTGT TTATTGAAGC GATGCAAAAC TCTGGCGCAC AAGTATTGCC GGTAGATAGT GAACACAACG CTATTTTCCA GTGTTTATCT GAGCGTTCAC AGCTTGAGAT AGGTCGTTGT GACCTAACTG GTGCAGGGGT TTCTCATATT TTGCTGACAG GTTCTGGTGG TCCGTTTTTA ACCTCAGATT TATCGTCACT GGTAAATATG ACGCCTGATC AGGCCTGTAA ACACCCTAAT TGGTCTATGG GGCGTAAGAT CTCGGTTGAT TCTGCGACCA TGATGAATAA AGGTCTCGAA TATATTGAGG CGCGTTGGTT GTTTAATGCA AGTAGCGACC AGTTAAAGGT TGTGATTCAC CCTCAAAGTG TGATTCATTC TATGGTGCAA TACCGTGATG GCTCAGTGTT AGCGCAATTG GGGAATCCAG ATATGCGTAC ACCGATTGCC CATTGTATGT CATTTCCACA AAGAATTAGC TCGGGAGTTG AACCTTTAGA CTTTTTTAAA GTCGGACAGT TAAGCTTCTT AGAACCTGAT TTTAATAGGT TCCCCTGTTT AGCATTGGCG ATAGAAGCAT GTAAGCAAGG GCAAGAAGCG ACAACCGTAT TAAACGCCGC CAATGAAATC TCTGTGCAGG CATTTTTAGA TGGCAAGATC CGCTTTACCG ATATAGCAAA AATAAACGAA CAAAGCTTAA TGAATACGGC GACGCATCCA TTAAACTGTA TTGATGATAT CTTGGCTTTA GACTTTCAAA GTCGTCAATA CACATTAAAC GCTATTACTA AGCTGAATTA G
|
Protein sequence | MQNMVILGAT GSIGASTLNV VACNPEQYKV FALVANTNVA KMLEICIAHQ PKIAHMVDAK AAQALKQQLP SHLKIEVTTG EDELLSLVSC SEVDTVMAAI VGAAGLPSTL AAVNAGKRVL LANKESLVMS GQLFIEAMQN SGAQVLPVDS EHNAIFQCLS ERSQLEIGRC DLTGAGVSHI LLTGSGGPFL TSDLSSLVNM TPDQACKHPN WSMGRKISVD SATMMNKGLE YIEARWLFNA SSDQLKVVIH PQSVIHSMVQ YRDGSVLAQL GNPDMRTPIA HCMSFPQRIS SGVEPLDFFK VGQLSFLEPD FNRFPCLALA IEACKQGQEA TTVLNAANEI SVQAFLDGKI RFTDIAKINE QSLMNTATHP LNCIDDILAL DFQSRQYTLN AITKLN
|
| |