Gene Spea_2879 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_2879 
Symbol 
ID5663270 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand
Start bp3517781 
End bp3518971 
Gene Length1191 bp 
Protein Length396 aa 
Translation table11 
GC content44% 
IMG OID641237519 
Product1-deoxy-D-xylulose 5-phosphate reductoisomerase 
Protein accessionYP_001502732 
Protein GI157962698 
COG category[I] Lipid transport and metabolism 
COG ID[COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase 
TIGRFAM ID[TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value3.44677e-09 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAAAATA TGGTGATTTT AGGCGCAACA GGCTCCATTG GTGCAAGCAC CTTGAATGTT 
GTGGCGTGTA ATCCTGAGCA GTACAAGGTT TTTGCGTTAG TGGCAAATAC TAATGTCGCC
AAAATGCTAG AGATCTGTAT TGCGCATCAG CCTAAGATTG CCCATATGGT CGATGCAAAA
GCGGCTCAAG CGCTCAAGCA GCAACTTCCA AGTCATCTCA AAATTGAAGT GACTACTGGT
GAAGATGAGC TGTTGTCTCT TGTGAGCTGC AGTGAGGTTG ATACCGTGAT GGCGGCCATT
GTCGGCGCCG CGGGTCTACC TTCAACTCTC GCCGCGGTTA ATGCGGGTAA ACGAGTATTG
CTGGCTAACA AAGAATCGTT AGTCATGTCT GGCCAGCTGT TTATTGAAGC GATGCAAAAC
TCTGGCGCAC AAGTATTGCC GGTAGATAGT GAACACAACG CTATTTTCCA GTGTTTATCT
GAGCGTTCAC AGCTTGAGAT AGGTCGTTGT GACCTAACTG GTGCAGGGGT TTCTCATATT
TTGCTGACAG GTTCTGGTGG TCCGTTTTTA ACCTCAGATT TATCGTCACT GGTAAATATG
ACGCCTGATC AGGCCTGTAA ACACCCTAAT TGGTCTATGG GGCGTAAGAT CTCGGTTGAT
TCTGCGACCA TGATGAATAA AGGTCTCGAA TATATTGAGG CGCGTTGGTT GTTTAATGCA
AGTAGCGACC AGTTAAAGGT TGTGATTCAC CCTCAAAGTG TGATTCATTC TATGGTGCAA
TACCGTGATG GCTCAGTGTT AGCGCAATTG GGGAATCCAG ATATGCGTAC ACCGATTGCC
CATTGTATGT CATTTCCACA AAGAATTAGC TCGGGAGTTG AACCTTTAGA CTTTTTTAAA
GTCGGACAGT TAAGCTTCTT AGAACCTGAT TTTAATAGGT TCCCCTGTTT AGCATTGGCG
ATAGAAGCAT GTAAGCAAGG GCAAGAAGCG ACAACCGTAT TAAACGCCGC CAATGAAATC
TCTGTGCAGG CATTTTTAGA TGGCAAGATC CGCTTTACCG ATATAGCAAA AATAAACGAA
CAAAGCTTAA TGAATACGGC GACGCATCCA TTAAACTGTA TTGATGATAT CTTGGCTTTA
GACTTTCAAA GTCGTCAATA CACATTAAAC GCTATTACTA AGCTGAATTA G
 
Protein sequence
MQNMVILGAT GSIGASTLNV VACNPEQYKV FALVANTNVA KMLEICIAHQ PKIAHMVDAK 
AAQALKQQLP SHLKIEVTTG EDELLSLVSC SEVDTVMAAI VGAAGLPSTL AAVNAGKRVL
LANKESLVMS GQLFIEAMQN SGAQVLPVDS EHNAIFQCLS ERSQLEIGRC DLTGAGVSHI
LLTGSGGPFL TSDLSSLVNM TPDQACKHPN WSMGRKISVD SATMMNKGLE YIEARWLFNA
SSDQLKVVIH PQSVIHSMVQ YRDGSVLAQL GNPDMRTPIA HCMSFPQRIS SGVEPLDFFK
VGQLSFLEPD FNRFPCLALA IEACKQGQEA TTVLNAANEI SVQAFLDGKI RFTDIAKINE
QSLMNTATHP LNCIDDILAL DFQSRQYTLN AITKLN