Gene Spea_2787 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_2787 
Symbol 
ID5663180 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand- 
Start bp3404570 
End bp3405217 
Gene Length648 bp 
Protein Length215 aa 
Translation table11 
GC content44% 
IMG OID641237429 
Productouter membrane protein W 
Protein accessionYP_001502642 
Protein GI157962608 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3047] Outer membrane protein W 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0424619 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGAATA ATAAAATCCT TTCTAGCTTG ATCGCCACCG CCCTACTAAC GACAGGTTTT 
ACCTCTTCAG CATTAGCTCA CCAAGCTGGC GACATTATTG TCCGTGCAGG TGTAGCAGTA 
GTTGCCCCGA ATGAATCTAG CCCAGTTGTT GCCAATATTG CCGAGTTTGG AGTGAGTGAT 
AATACTCAGC TAGGTTTGAA CTTCGGCTAT ATGTTGACTG ACAACATAGG TATTGAGTTG 
TTAGCCGCTA CGCCATTTAC TCACGATATC TCATTAGGTG AGCATGGAAA GATTGCCGAG 
ACTAAGCAGC TACCACCAAC CCTTGTGGCT CAGTATTATT TTGGCGATGC GAACTCTAAG 
TTACGTCCAT ATATCGGCGC AGGTGTTAAC TTTACTAATT TCTTCGATAA CGAATTTACC 
AACGACTTAG GTGGCGCGTT AACTGATTTA AGCATGTCCA ACTCATGGGG CTTAGCGGCT 
CAGGTAGGTC TTGATTATCA AATCAATGAT AGCTGGCTAA TAAATGCGTC AGTTTGGTAT 
GCACAGATCA GTACCGACGT TAAGTTCAAC TTAGGCGGTG CACCACAAAA AGTCGAAACA 
GATATCGACC CATGGGTTTA CATGGTGAGC GTAGGTTACA CCTTCTAA
 
Protein sequence
MMNNKILSSL IATALLTTGF TSSALAHQAG DIIVRAGVAV VAPNESSPVV ANIAEFGVSD 
NTQLGLNFGY MLTDNIGIEL LAATPFTHDI SLGEHGKIAE TKQLPPTLVA QYYFGDANSK 
LRPYIGAGVN FTNFFDNEFT NDLGGALTDL SMSNSWGLAA QVGLDYQIND SWLINASVWY 
AQISTDVKFN LGGAPQKVET DIDPWVYMVS VGYTF