Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_2610 |
Symbol | |
ID | 5663003 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 3179409 |
End bp | 3180497 |
Gene Length | 1089 bp |
Protein Length | 362 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641237248 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_001502465 |
Protein GI | 157962431 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00000256578 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATAATT CCCAGAAAAA CGCCCTGAAA AACACTGCCC TACTTGCCTA TCTATTAATA AGCTCTCTAC CATTTTTGAG CCTATCTGCG TCGGTATCGG CTGAGTCTAG AGCGGCTGCT GACAATAAGC ATTTAGAATC AATAACAGTA AGCTTCAAAC CCTATCCCAA CTGGGTACAG CTAGATGCAG TCATTGAGCC CACCAAGTCC GCTACCGTAT CGGCACAAAC CTCCGGTCGC ATTATCAAGC TCAATTACGA TATCAATGAT GTGGTTGCAA CGGGTGCCCC ACTACTTGAG ATCACCAGTA AAGAACAAGG CGCCCAGCTC GCCGCAGCAG AAGCCGAATA CGCCAAAGCC CGCGCCGTCA ATGTCGAAGC CCAGCAGCAG TTTAAACGCT ATCAAGCGCT ATTTCCTAAG GGAGCCATTT CCAAGGGAGC GATGGATGAA GCCGAAGCTA ACGCAAAGTC TGCTCAACAA GCAGTAAGCG CAGCTAAAGC TAGAATTACT CAAGCCAGCG AATCATTAAA TTATACTCTT GTCAGTGCGC CATTTGCAGG CATAGTCACC CAAAGACATG TTGAAGAGGG CGAAACAGTA AGCCCTGGGC AAGCCTTATA CTCAGGTTAC TCCTTAAGCC AGATGCGCGC AGTCACTCAA ATCCCCCAGC GTTATGTGGA AGCACTAAAA CAACAGCCCA AATTCAAATT AACCTTAGCC AACGGCCAGC AGATAAACAG TGAGCAACTG ACACTATTTA CCTTTGTTGA TCCAAAGTCT CATAGCTATA AAGTACGCAT TAACTTACCT GAAAATACAG ATGGCCTTAT CCCTGGTAGC CTAATTAAAG CCCAATTTGT TAGCGGTAGC CGTAATACCA TATTCATCCC CGAGTCGTCA TTACTCACCA TGAATGAACT CAGCGCCGTC TATATTCAGC AAAATGATGC ATGGGTACTC AATCAGGTCA GAACTGGACT CAGCAATAAT GGCAAAGTCG AGATCTTAGC AGGATTATCA GAGGGTGATG TAGTTGCTAA AGATGCCTAC CACGCACTGT TACTGCTTAA GCAAAGCAAT AAACCATGA
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Protein sequence | MNNSQKNALK NTALLAYLLI SSLPFLSLSA SVSAESRAAA DNKHLESITV SFKPYPNWVQ LDAVIEPTKS ATVSAQTSGR IIKLNYDIND VVATGAPLLE ITSKEQGAQL AAAEAEYAKA RAVNVEAQQQ FKRYQALFPK GAISKGAMDE AEANAKSAQQ AVSAAKARIT QASESLNYTL VSAPFAGIVT QRHVEEGETV SPGQALYSGY SLSQMRAVTQ IPQRYVEALK QQPKFKLTLA NGQQINSEQL TLFTFVDPKS HSYKVRINLP ENTDGLIPGS LIKAQFVSGS RNTIFIPESS LLTMNELSAV YIQQNDAWVL NQVRTGLSNN GKVEILAGLS EGDVVAKDAY HALLLLKQSN KP
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