Gene Spea_2610 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_2610 
Symbol 
ID5663003 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand
Start bp3179409 
End bp3180497 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content46% 
IMG OID641237248 
ProductRND family efflux transporter MFP subunit 
Protein accessionYP_001502465 
Protein GI157962431 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000256578 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATAATT CCCAGAAAAA CGCCCTGAAA AACACTGCCC TACTTGCCTA TCTATTAATA 
AGCTCTCTAC CATTTTTGAG CCTATCTGCG TCGGTATCGG CTGAGTCTAG AGCGGCTGCT
GACAATAAGC ATTTAGAATC AATAACAGTA AGCTTCAAAC CCTATCCCAA CTGGGTACAG
CTAGATGCAG TCATTGAGCC CACCAAGTCC GCTACCGTAT CGGCACAAAC CTCCGGTCGC
ATTATCAAGC TCAATTACGA TATCAATGAT GTGGTTGCAA CGGGTGCCCC ACTACTTGAG
ATCACCAGTA AAGAACAAGG CGCCCAGCTC GCCGCAGCAG AAGCCGAATA CGCCAAAGCC
CGCGCCGTCA ATGTCGAAGC CCAGCAGCAG TTTAAACGCT ATCAAGCGCT ATTTCCTAAG
GGAGCCATTT CCAAGGGAGC GATGGATGAA GCCGAAGCTA ACGCAAAGTC TGCTCAACAA
GCAGTAAGCG CAGCTAAAGC TAGAATTACT CAAGCCAGCG AATCATTAAA TTATACTCTT
GTCAGTGCGC CATTTGCAGG CATAGTCACC CAAAGACATG TTGAAGAGGG CGAAACAGTA
AGCCCTGGGC AAGCCTTATA CTCAGGTTAC TCCTTAAGCC AGATGCGCGC AGTCACTCAA
ATCCCCCAGC GTTATGTGGA AGCACTAAAA CAACAGCCCA AATTCAAATT AACCTTAGCC
AACGGCCAGC AGATAAACAG TGAGCAACTG ACACTATTTA CCTTTGTTGA TCCAAAGTCT
CATAGCTATA AAGTACGCAT TAACTTACCT GAAAATACAG ATGGCCTTAT CCCTGGTAGC
CTAATTAAAG CCCAATTTGT TAGCGGTAGC CGTAATACCA TATTCATCCC CGAGTCGTCA
TTACTCACCA TGAATGAACT CAGCGCCGTC TATATTCAGC AAAATGATGC ATGGGTACTC
AATCAGGTCA GAACTGGACT CAGCAATAAT GGCAAAGTCG AGATCTTAGC AGGATTATCA
GAGGGTGATG TAGTTGCTAA AGATGCCTAC CACGCACTGT TACTGCTTAA GCAAAGCAAT
AAACCATGA
 
Protein sequence
MNNSQKNALK NTALLAYLLI SSLPFLSLSA SVSAESRAAA DNKHLESITV SFKPYPNWVQ 
LDAVIEPTKS ATVSAQTSGR IIKLNYDIND VVATGAPLLE ITSKEQGAQL AAAEAEYAKA
RAVNVEAQQQ FKRYQALFPK GAISKGAMDE AEANAKSAQQ AVSAAKARIT QASESLNYTL
VSAPFAGIVT QRHVEEGETV SPGQALYSGY SLSQMRAVTQ IPQRYVEALK QQPKFKLTLA
NGQQINSEQL TLFTFVDPKS HSYKVRINLP ENTDGLIPGS LIKAQFVSGS RNTIFIPESS
LLTMNELSAV YIQQNDAWVL NQVRTGLSNN GKVEILAGLS EGDVVAKDAY HALLLLKQSN
KP