| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2575 |
|---|
| Symbol | |
|---|
| ID | 5662968 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 3134184 |
|---|
| End bp | 3135503 |
|---|
| Gene Length | 1320 bp |
|---|
| Protein Length | 439 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641237213 |
|---|
| Product | Na+/H+ antiporter NhaC |
|---|
| Protein accession | YP_001502430 |
|---|
| Protein GI | 157962396 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2056] Predicted permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000723865 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGCTG TTGTCATCGC TGTATGCCTA ATGTTAGGCC TCAGCTTAGC TAGAGTTAAT
ATCGTCGTTG CACTCACAAT CTCTGCATTA GTTGCAGGAC TGGTAGGAGG CATGGATCTG
CATCAAACCG TCGCAGCTTT TAATACAGGT CTTGGTGGCG GCGCACAAAT AGCCTTAAGC
TACGCGCTAC TTGGTGCTTT TGCCGTTGCC TTGTCGCATT CAGGTCTTAC TACGGTAATT
TCGAATAAGG TTATTAGTTT ATTAGGCAAA GAGCAGAATA GCACCAACAA CAAACGAGTT
CGTTGGGTGC TACTTTTAAC GATTCTTGCT ATGGCTATCT CCTCACAGAA TATCTTACCG
ATCCACATAG CATTCATTCC GATTTTGATC CCACCGTTAC TGCATGTCAT GTCTAAACTA
AAAATGGATC GTCGTTTAGT GGCCTGCGTG CTCACTTTCG GTTTAGTCAC CACTTACATG
GTATTACCTA TCGGCTTTGG CGGAATTTTT CTTTACGATA TTCTGTTATC CAACCTAACT
AACAATGACC TGCAGGCCGT AAAGGCTCAA GTCGCTCCAG CCATGATAAT CCCAGCTCTA
GGCATGGTGT TTGGTTTATT AGTTGCTATC TTTATCAGCT ACCGTAAGCC TCGTGAATAT
CAAGAAGAGC AAATTTTAGC CGCCGAACCC GAAGAGGGCA TAAACCCACG CAACATTGGC
ATTGCAGCCA TCGCCGTTGT TGCGACATTA GTTGTACAGC TATATACAGG TTCAATGATT
TTCGGCGCTT TGATGGGCTT TATCGTTTTC AGTTTTTCAG GCGCACTTAA ACATGTTGCC
GATCAAGATA TCTTCAACCA AGGCGTACGC ATGATGGCCA ATATTGGCTT TATCATGATC
TCTGCCGCGG GTTTTGCTGC CGTTATTAAG GGAACGGGTG ATGTTGCGAG CTTAGTTGAG
ATTATGAATA CGGCGATTGG GGATAATAAA GCCTTAGCTG CGTTCTTGAT GTTACTCGTT
GGCTTACTTA TCACCATGGG GATTGGTTCA TCGTTTTCGA CCATACCAAT TATTGCCGCA
ATCTATGTGC CTTTAGCAAT GAGCTTTGGC TTTTCAGTTG AAGCAACCAT TGCCCTCGTC
GGTACAGCTG CTGCGCTAGG AGATGCCGGT TCGCCAGCAT CAGAGTCAAC TTTAGGGCCT
ACAGCGGGTC TTAATGCCGA TGGACAGCAC GACCATATGA AAGACAGTGT TATCCCAACC
TTCATTCACT ACAATATTCC ATTATTAGTG TTTGGCTGGA TTGCCGCTAT GGTGCTCTAG
|
|---|
| Protein sequence | MNAVVIAVCL MLGLSLARVN IVVALTISAL VAGLVGGMDL HQTVAAFNTG LGGGAQIALS
YALLGAFAVA LSHSGLTTVI SNKVISLLGK EQNSTNNKRV RWVLLLTILA MAISSQNILP
IHIAFIPILI PPLLHVMSKL KMDRRLVACV LTFGLVTTYM VLPIGFGGIF LYDILLSNLT
NNDLQAVKAQ VAPAMIIPAL GMVFGLLVAI FISYRKPREY QEEQILAAEP EEGINPRNIG
IAAIAVVATL VVQLYTGSMI FGALMGFIVF SFSGALKHVA DQDIFNQGVR MMANIGFIMI
SAAGFAAVIK GTGDVASLVE IMNTAIGDNK ALAAFLMLLV GLLITMGIGS SFSTIPIIAA
IYVPLAMSFG FSVEATIALV GTAAALGDAG SPASESTLGP TAGLNADGQH DHMKDSVIPT
FIHYNIPLLV FGWIAAMVL
|
|---|
| |