| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2557 |
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| Symbol | |
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| ID | 5662950 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 3110390 |
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| End bp | 3113818 |
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| Gene Length | 3429 bp |
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| Protein Length | 1142 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641237183 |
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| Product | histidine kinase |
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| Protein accession | YP_001502412 |
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| Protein GI | 157962378 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0591] Na+/proline symporter
[COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.257497 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACTTGA CCGTGTTAGT TGGCACCATT GCCATTGTTT ATGTGCTGCT GCTGTTTCTA
ATCGCTTGGG GCGCTGAGCG CTGGTTTGGC GGCATCACTA AACGCATACA AACTTGGGTC
TATGGTTTAA GTCTCGCAGT ATACTGTTCA TCATGGAGTT TTCTTGGAAC GGTAGGGCAA
TCTGCTCAGG ATCTGTGGTC ATTTCTGCCT ATCTTTATCG GTCCAATCTT AATATTTACT
TTTGGCTTTA GCTTACTACG TAAGATGGTG ATTGTTTCTA AGGCACAGAA TATCACCTCT
GTTGCAGATT TTATTGCCGC ACGCTATGGC AAGTCACAGC TTCTCGCCGC GATTGTTACC
TTCATAGCCC TGTTTGGAAT AATGCCTTAT ATCGCACTGC AGCTTAAAGC TATGGTGTTT
AGTCTTAATC TTTTTCAGCC CTATGGTGAG TTATTCGATG GGGCTAAAGT ATCACTAATT
ATCACTGCCA TCTTGGCCAT TTTTGCCATT TTATTTGGTA CGAGAAAACT TGACGCAACT
GAACATAACC CTGGCATGAT GTTGGCGATC GCCTTTGAGT CTCTGGTGAA GCTCGGAGCG
TTCTTGCTGG TAGGTATTGT GATTAGTTTC GGTGTCTTTG ATGGTTTTGG CGATATCTGG
CAGCAAGCCA CAGAGCGAGA CTTAATTAAT GAGCCCAATA TTCGCTTAGA GTCGCTTACG
CCTGAGTTAC TGGTTGGGAT GGCGGCTTTT CTCTGTATGC CACGCCAGTT TCACGTGATG
ATGGTGGAGT GTGAAAATGA GAGCACTATA CTTAAAGCGC GCTGGTTATT TCCACTCTAC
TTAGTGTTGT TTGGCATGTT CGTCGCGCCG TTAGCATTGG CTGGGCAGCT TTTACTGGGT
GACGCAGTTG CAGCCGATAC GTATGTAATA AACCTTCCTT TAGCTCTTAA TCAGCCCTGG
CTTGCGGTCG TAGCGCTCTT AGGGACGCTT TCTGCGGCAA CTGGCATGGT GATTGTCGCC
GTAGTAACCA TTAGTGTGAT GGTGAGTAAT GAGTGGTTAG TGCCATTGAT GCTGCGTACT
GGTCAGATAA GAGAGAAAAA TTTTAGCCAG TTTTCCCAAT TGCTACTTAA CGCAAGACGT
TTGGCAATCG TTCTGATTTT GGGGCTTGGT TACTTTAGCT ATCTATCATT TATGGATAGT
GACTCGCTTT CATCACTGGG TATGCTCTCT TTTGGCGCTT TTGCTCAGTT AGCACCTGCG
CTTATAGGTG GTATGTACTG GAAGCATGGA AATCGCAGTG GTGTATTTTT AGGGCTTGCA
GTGGGTTTTA GTTGTTGGTG CTACATCTTA TTACAAGGTG TGGTGAACTC GCCGACGATT
GTCACTTCTG AGTTTGTACT GCTTGAATCG ATTACGCCTA ATGTGCGCGA CATTCTCATT
GCGTTATTAG CAAACTGTGC CTGTTATATG TTGGGCTCTA TCTGGTTTAG AGCTGGAGTG
GCAGAGCGAA TGCAGGCGAG CGCATTTGTA ACCCCTGGAC AACTTAAGAA AGATATTAAT
AGAAAGAGTA GCCCGGTTTC ACAGCAAGAC TTACTTATTT TAGCCAGTCG CTTTGTGAGC
CCTACTCGCG CCTACGAGAG CTTTTCTGCA TTCTCAGAAG AGGCGGTAAA AAGTGATAGC
TGGCATAAAG TGGCGCCGCC AGAACTTATC GCCCATACAG AGCATATGTT AGCCGGAGTA
TTAGGGGCTT CTAGCGCCTC CTTGGTGCTT GACTCTGTGC TACAAGGACG TGATTTAGCC
CTAGATGAAG TGTTTAGCTT GGTCGATGAA GCCTCCTCGA AGATAATTTT AAGCCAAGAT
ATGCTACGTG GCGCTATAGA GCACGCCTAT GAAGGCATGA GTGTGGTTGA TAAAGATCTT
AATTTGGTGG CTTGGAACTA TAAATACGCA GAGCTATATA ATTATCCTGA GCATTTCCTC
CAAGCTGGGA TGCCAATTAG CGACGTGGTG CGCTTTAATG CAGCCCGAGG ATTTTGTGGT
GTAGGAGACA TAGAGGCGCA AGTTGAAAAG CGAGTACAAC ATATGCGCAA TGGCACGCCA
CACGTTTCCG AGCGGCAACG CAAAGATGGC AAGGTTATTA AAATTCAAGG CAACCCAATG
CCCAGTGGTG GTTTTGTGAT GACCTTTACC GATATTACTC AATATCGTCT GCAAGCCAAA
GCACTGCAGC AAGCAAACGA AACTTTAGAG GCCAGAGTTC AAGAGCGTAC CTATGAGCTA
TCTATGCTCA ATAGCAAGCT GCTTGAGGCT AAGGCTCAAG AGGAGATGGC TAATGCGTCT
AAAAGTCGCT TCTTAGCAGC AGTAGGTCAT GATTTAATGC AGCCGTTAAA TGCAGCACGG
CTGTTTACCG CCTCTTTATC GCAATATCCA AATCTCGATC AAGAGGGGAA AACGACCCTC
AACCATGTTA ACAGCTCACT GAAGATTGCA GGAGAGCTGC TTACCGACCT ATTGGATATC
TCTAAGCTTG ACTCCGATAT GGTAGAAGTT AATCGACGTG ATTTTGCTAT TGCTGATTTA
ATCGATGGTT TAGCGGTCGA GTTTGATGCA ATGTCTAAGG ATTGTTTAAT CAAATTTAAC
TATGTCCCAA GCTCGGCAAC CATCAATTCA GATGCGAGTC TGTTGCGACG TGTACTGCAA
AATTTCCTAA CAAATGCTTA TCGGTACGCT AAGGGCAATC GAGTCTTATT AGGTTGTCGA
CGCCGTGGTG ATGAACTGGA GATCCAAGTT ATAGACACAG GTTGTGGTAT CGATGAGAGT
GAAACAACCG AGATTTTTAA AGAGTTTAAA CGGCTGGATA ACCCTGAGAG CAAGAGTGTG
AGCGGCTTAG GGTTAGGCTT AGCGATTGCA GATAGGATCA GCCGAGTGCT ATCCCATGAG
ATCAATGTCA GATCTGAACT GGGTAAAGGC TCTATGTTCT CTATTCGAGT ACCAATAGGT
AAAGAAAATA CTGCACCTAA ACTTAAAAAA GAGCCTTCAT TGTTACAGCC TCTAGCGGGA
GTTAAGGTGC TGTGTATCGA TAACGAGGAG GCAATTTTAG CCGGACTTGA GAGTTTATTA
AGCCGTTGGC AGTGCGAAGT GATATGTGCA AGTGATTTGG CTGATGCTCG CATCAAGCTC
GGATTAAAAG GGGTAGCCCC CGATATTATC CTTGCTGACT ATCATTTGGA TAACGATCAA
AATGGTGTCG ATGCCATGGA CGGTATTAGA AACCTGTATG GTGAGCACCT ACCAGGTATT
TTGATCACCG CCAACACCCA AAAGGAGTTG ATAGACGATA TGCAGCGCCG TGGTTATCAT
TATATGGCAA AGATGGTCAA GCCTGCCGCT TTAAGGGCAT TAATCTCAAG CCTAGTAAGG
AAAAAATAA
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| Protein sequence | MNLTVLVGTI AIVYVLLLFL IAWGAERWFG GITKRIQTWV YGLSLAVYCS SWSFLGTVGQ
SAQDLWSFLP IFIGPILIFT FGFSLLRKMV IVSKAQNITS VADFIAARYG KSQLLAAIVT
FIALFGIMPY IALQLKAMVF SLNLFQPYGE LFDGAKVSLI ITAILAIFAI LFGTRKLDAT
EHNPGMMLAI AFESLVKLGA FLLVGIVISF GVFDGFGDIW QQATERDLIN EPNIRLESLT
PELLVGMAAF LCMPRQFHVM MVECENESTI LKARWLFPLY LVLFGMFVAP LALAGQLLLG
DAVAADTYVI NLPLALNQPW LAVVALLGTL SAATGMVIVA VVTISVMVSN EWLVPLMLRT
GQIREKNFSQ FSQLLLNARR LAIVLILGLG YFSYLSFMDS DSLSSLGMLS FGAFAQLAPA
LIGGMYWKHG NRSGVFLGLA VGFSCWCYIL LQGVVNSPTI VTSEFVLLES ITPNVRDILI
ALLANCACYM LGSIWFRAGV AERMQASAFV TPGQLKKDIN RKSSPVSQQD LLILASRFVS
PTRAYESFSA FSEEAVKSDS WHKVAPPELI AHTEHMLAGV LGASSASLVL DSVLQGRDLA
LDEVFSLVDE ASSKIILSQD MLRGAIEHAY EGMSVVDKDL NLVAWNYKYA ELYNYPEHFL
QAGMPISDVV RFNAARGFCG VGDIEAQVEK RVQHMRNGTP HVSERQRKDG KVIKIQGNPM
PSGGFVMTFT DITQYRLQAK ALQQANETLE ARVQERTYEL SMLNSKLLEA KAQEEMANAS
KSRFLAAVGH DLMQPLNAAR LFTASLSQYP NLDQEGKTTL NHVNSSLKIA GELLTDLLDI
SKLDSDMVEV NRRDFAIADL IDGLAVEFDA MSKDCLIKFN YVPSSATINS DASLLRRVLQ
NFLTNAYRYA KGNRVLLGCR RRGDELEIQV IDTGCGIDES ETTEIFKEFK RLDNPESKSV
SGLGLGLAIA DRISRVLSHE INVRSELGKG SMFSIRVPIG KENTAPKLKK EPSLLQPLAG
VKVLCIDNEE AILAGLESLL SRWQCEVICA SDLADARIKL GLKGVAPDII LADYHLDNDQ
NGVDAMDGIR NLYGEHLPGI LITANTQKEL IDDMQRRGYH YMAKMVKPAA LRALISSLVR
KK
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