| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2553 |
|---|
| Symbol | |
|---|
| ID | 5662946 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 3106930 |
|---|
| End bp | 3107358 |
|---|
| Gene Length | 429 bp |
|---|
| Protein Length | 142 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641237179 |
|---|
| Product | thioesterase superfamily protein |
|---|
| Protein accession | YP_001502408 |
|---|
| Protein GI | 157962374 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1607] Acyl-CoA hydrolase |
|---|
| TIGRFAM ID | [TIGR00369] uncharacterized domain 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.28298 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTTTAA CTCAAACTCC CACACAATTT CCCGATGATG TCTCGCTTCG AATCGAGCAA
TCTGAAGCCC GAGTCATCAA AGCTGTGTTC CCCTCTATTA CTAATCATCA CAATACCCTG
TTTGGTGGTG AAGCATTGGC CTGGATGGAT GAAACGGCCT TTATCGCAGC AACCCGCTTC
TGCCGTAAAA CCCTAGTAAC CGTGAGTTCG GATAGAATCG ACTTCAATAA GCCTATTCCA
GCTGGAAGCC TAGCCGAAAT CATTGCTCGC GTGATCCATG TGGGGAACAC TTCTGTTAAA
GTCGAAGTGA ATATATTCGT AGAAGACATG TATCAAGACT TAAGGGAGCA TGCTATTCGT
GGTGTATTTA CCTTTGTAGC GGTAGACGAG CAAAGAAAAC CAACTGCAGT TTGGCCGCCC
CATTGTTAA
|
|---|
| Protein sequence | MPLTQTPTQF PDDVSLRIEQ SEARVIKAVF PSITNHHNTL FGGEALAWMD ETAFIAATRF
CRKTLVTVSS DRIDFNKPIP AGSLAEIIAR VIHVGNTSVK VEVNIFVEDM YQDLREHAIR
GVFTFVAVDE QRKPTAVWPP HC
|
|---|
| |