| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2532 |
|---|
| Symbol | |
|---|
| ID | 5662925 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 3082342 |
|---|
| End bp | 3084600 |
|---|
| Gene Length | 2259 bp |
|---|
| Protein Length | 752 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641237158 |
|---|
| Product | ATP-dependent Clp protease, ATP-binding subunit clpA |
|---|
| Protein accession | YP_001502387 |
|---|
| Protein GI | 157962353 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
|---|
| TIGRFAM ID | [TIGR02639] ATP-dependent Clp protease ATP-binding subunit clpA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000101202 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAATA AAGATCTTGA AGTCACCTTA AATCTGGCTT TTCAACAAGC CAGAGATGCC
CGTCATGAGT ACATGACTGT TGAGCATCTA TTGTTGGCAT TAATCGATAA CCCAGCCGCA
CAAGAGGCGT TAGTTGCTTG CGGAGCAAAT TTAGAGAAAT TAAGAGATGA AGTCTCTAGT
TTCATTCAAC AGACCACGCC AATTATCTCC GATCCCGAAG ACGAGAAAGA GACTCAACCG
ACACTGGGCT TTCAACGCGT TCTGCAAAGA GCCGTATTTC ACGTGCAGTC ATCAGGCCGC
AATGAGGTCA ACGGTGCTAA CGTCTTAGTC GCTATTTTCA GTGAACAAGA GTCTCAAGCG
GTTTACCTGC TTCGAACTGG CGATGTGACC CGTTTAGATG TGGTCAATTT TATTTCCCAT
GGCTTTTCGA AAAACGATAT CGATACCGGC CCAGAGCAAA GCCGTATCGA AGATCAAACC
GAGAACGAAG AAGAGCGCAG TATCTTGTCT CAGTTTACCG CTAACCTGAA TGAGTTAGCT
AAAAACGGCA GTATTGACCC GCTGATTGGC CGTACCGATG AGATTGAGCG CTCGATTCAA
ATTCTTTGCC GTCGCCGTAA GAATAACCCA CTGCTCGTGG GTGAGGCTGG GGTGGGTAAA
ACCGCCATTG CTGAAGGCTT AGCTTATCGC ATCGTTAAAG AAGAAGTGCC TGAGGTGATG
AGTGAAGCGA CCGTATACTC CCTCGACTTA GGTGCATTGC TTGCCGGTAC CAAGTACCGT
GGTGATTTTG AGAAGCGTTT TAAAGGCTTA CTCAAAGAGT TAGCGAATGA CGAGCATGCG
ATCTTATTTA TCGATGAGAT CCATACCATT ATTGGTGCAG GCTCGGCTTC AGGTGGTGTC
ATGGATGCCT CTAACTTGCT TAAACCGCTG TTATCGGGTG GTAAACTACG CTGTATGGGC
TCGACCACGT TTCAAGAGTA CCAAAGTATT TTTGAGAAGG ACCGAGCGCT AGCCCGTCGC
TTCCAGAAGG TGGACATTAA CGAACCATCG GTTGCTGAGA CTACAAAGAT TTTACAAGGT
CTTAAGTCAA AGTACGAAGA GCACCACAAT GTGCGCTATA CCATGGCAGC ATTGAGCGTG
GCAGCAAGGT TATCAGATAA GCATATCAAC GATAGACATC TGCCAGATAA AGCCATCGAT
GTGATTGACG AAGCGGGTGC ACGCATGGCG ATGCAGCCAG CGAGCAAACG TAAAAAGACG
ATTGGTCAAG CGGAGATCGA GTCGATTATC GCTAAGATGG CGCGTATTCC TGAGAAGTCC
GTATCGAGCT CTGACAAGGA TATGCTTAAA AACCTTGAGC GTAACCTTAA GATGGTGGTG
TTTGGCCAAG ATCAGGCGAT TGAGGGGCTT AGTTCGGCAA TTCGCTTGTC TCGAAGTGGT
CTAGGTGGTG AGCACAAGCC TGTAGGTAGC TTCCTGTTTG CTGGTCCTAC CGGTGTCGGT
AAAACAGAGG TCACCAGTCA GCTTGCTAAA TGTTTAAGTC TGAAGCTGGT TCGATTCGAT
ATGTCGGAAT ACATGGAAAG CCATACCGTG TCACGTCTGA TTGGCGCGCC TCCTGGTTAT
GTCGGCTATG ACCAAGGTGG GCTATTAACC GACGCTGTGA TTAAGAATCC ACATTGTGTG
GTGCTGCTCG ATGAGATTGA GAAGGCGCAT CCTGATGTGT ATAACTTGCT ACTGCAGGTG
ATGGATCACG GTACTTTGAC CGATAATAAT GGCCGTAAAG CTGACTTTAG GCATGTCACC
CTCGTGATGA CGACTAACGC CGGTGTACAG GAAACCATTC GAAAGTCGAT AGGCTTTAAG
CAGCAAGACC ATACTCAGGA TGCCTTGTCG GAAATCAATA AGGTGTTTTC GCCTGAGTTC
CGTAACCGAC TCGACTCGAT TATCTGGTTC AACCATCTGG ATATGACGGT AATCGCGAAA
GTGGTTGATA AGTTCTTAGT TGAACTACAA GCACAGCTTG ATGATAAGTC TGTGACGCTC
GATGTCAGCG ACGAAGCGAG AACCTTACTT GCAGAGAAAG GTTACGATAA GTCGATGGGG
GCACGTCCGA TGGCTCGTGT GGTTACCGAG CTTATCAAGC GACCTCTAGC CGATGAGATC
TTATTCGGCG AGTTAGAGAA GGGCGGTATC GCCCGAGTCG ACGCTAAAGG CGATGAGATT
GTGATCACCA CAGAATCGCT AGAAAAAGTC ACTCATTAA
|
|---|
| Protein sequence | MLNKDLEVTL NLAFQQARDA RHEYMTVEHL LLALIDNPAA QEALVACGAN LEKLRDEVSS
FIQQTTPIIS DPEDEKETQP TLGFQRVLQR AVFHVQSSGR NEVNGANVLV AIFSEQESQA
VYLLRTGDVT RLDVVNFISH GFSKNDIDTG PEQSRIEDQT ENEEERSILS QFTANLNELA
KNGSIDPLIG RTDEIERSIQ ILCRRRKNNP LLVGEAGVGK TAIAEGLAYR IVKEEVPEVM
SEATVYSLDL GALLAGTKYR GDFEKRFKGL LKELANDEHA ILFIDEIHTI IGAGSASGGV
MDASNLLKPL LSGGKLRCMG STTFQEYQSI FEKDRALARR FQKVDINEPS VAETTKILQG
LKSKYEEHHN VRYTMAALSV AARLSDKHIN DRHLPDKAID VIDEAGARMA MQPASKRKKT
IGQAEIESII AKMARIPEKS VSSSDKDMLK NLERNLKMVV FGQDQAIEGL SSAIRLSRSG
LGGEHKPVGS FLFAGPTGVG KTEVTSQLAK CLSLKLVRFD MSEYMESHTV SRLIGAPPGY
VGYDQGGLLT DAVIKNPHCV VLLDEIEKAH PDVYNLLLQV MDHGTLTDNN GRKADFRHVT
LVMTTNAGVQ ETIRKSIGFK QQDHTQDALS EINKVFSPEF RNRLDSIIWF NHLDMTVIAK
VVDKFLVELQ AQLDDKSVTL DVSDEARTLL AEKGYDKSMG ARPMARVVTE LIKRPLADEI
LFGELEKGGI ARVDAKGDEI VITTESLEKV TH
|
|---|
| |