| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2480 |
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| Symbol | |
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| ID | 5662873 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 3025010 |
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| End bp | 3026923 |
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| Gene Length | 1914 bp |
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| Protein Length | 637 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641237106 |
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| Product | arginine decarboxylase |
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| Protein accession | YP_001502335 |
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| Protein GI | 157962301 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1166] Arginine decarboxylase (spermidine biosynthesis) |
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| TIGRFAM ID | [TIGR01273] arginine decarboxylase, biosynthetic |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.46516 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAATT GGTCTATTGA TGATGCACGC GCAAGTTATA ACGTAAATCA CTGGAGCCAA
GGACTATACG GCATTAGCGA TGATGGAGAG GTGACTGTTT CACCAGATCC AAGCCGCCCA
GATTGTAAGA TTGGTTTGAA TGAAATGGCA AAAGATATGG TTAAGTCAGG TGTGGCTTTA
CCCGTTTTGG TGCGTTTCCC ACAAATTTTA CATCATAGAG TAAATAGTGT TTGTCAGGCA
TTTAATCAGG CAATTAATAA GTATCAATAT GAAAATGATT ACTTACTGGT TTACCCGATT
AAAGTGAACC AACAGCAAAC TGTTGTTGAA GAGATCCTTG CCAGCCAGGT AGCAAAAGAA
GTACCACAGC TAGGTTTAGA AGCGGGCAGT AAGCCGGAGC TAATGGCAGT ACTGGCGATG
GCTCAAAAAG CCAGTTCGGT GATCATTTGT AACGGCTATA AAGATAAAGA ATATATCCGT
CTTGCCTTAA TCGGTGAAAA GCTAGGTCAC AAGGTGTATA TCGTCCTTGA GAAGATGTCA
GAGCTTAAAG TCGTGCTTGA GCAAGCTAAA GAGCTCGGCG TTACGCCGCG TCTTGGTTTA
CGTGTCCGTT TGGCATTCCA AGGTAAAGGT AAGTGGCAGG CTAGTGGTGG CGAGAAGTCA
AAGTTTGGAT TGAGTGCTGC TCAGGTGTTG CAAGTGATCA ACTCACTTAA GCAGGAAAAC
ATGCTTGAGT CATTAGAGTT GTTGCACTTC CACTTAGGTT CGCAAATCGC CAATATTCGC
GATATTCGAC AAGGTGTTAG CGAGGCTGGC CGTTTCTATT GTGAGTTGAT GAAACTTGGC
GCCAGTGTTA AGTGTTTCGA CGTGGGTGGC GGCTTAGCTG TTGATTACGA TGGTACGCGT
AGCCAAAGCA GCCATTCAAT GAACTATGGC TTAACCGAGT ATGCTAACAA TATCGTGAGT
GTTCTCACTG ATATGTGTAA AGAGTATGAG CAGCCGATGC CGAGAATTAT CTCAGAATCG
GGCCGTTACT TGACTGCACA TCATGCGGTA TTACTAACTG ACGTGATTGG TACTGAAGCG
TATAAGCCTG AAGATATTCA GCCTCCTGCA GAAGACGCAC CTCAGTTACT GCACAACATG
TGGCAGTCTT GGATCGAAGT CAGTGGTAAA GCCGATCAGC GCGCCTTGAT TGAGATTTAT
CATGATTGCC AGAGCGACTT AACTGAAGTG CACTCGCTGT TTGCCGTTGG TCAGTTAGGT
TTAGCTGAGC GTGCATGGGC GGAGCAGGTA AACTTACGCG TATGTTACGA ACTACAAGGT
AGCATGAGCG CTAAGTACCG TTTCCACAGA CCGGTTATTG ATGAGCTAAA CGAAAAACTA
GCAGACAAGT TCTTCGTTAA CTTCTCATTG TTCCAGTCAC TTCCTGACGC TTGGGGTATC
GATCAGGTAT TCCCTGTAAT GCCACTATCA GGACTTGATA AGGCGCCAGA GAGCAGGGCG
GTAATGTTAG ACATCACCTG TGACTCAGAC GGTACAGTGG ATCAGTACGT AGAAGGTCAA
GGTATTGAAA CAACGTTACC AGTACCTGCT TGGACACAAG AGAGCCCATA TTTAATCGGT
TTCTTCTTAG TCGGTGCATA TCAAGAGATT TTAGGTGATA TGCATAACTT GTTTGGTGAC
ACTAACTCAG CCGTTGTTCG TTTGGACGAC GATGCGCGCA CTAACGTTGA GTCGGTATTG
GCCGGTGATA CGGTTGCCGA CGTGCTTAGA TATGTGAACT TGGATGCGGT TTCATTTATG
AGAACCTATG AAGAGTTAGT GAACAAGCAT ATTGCTGAAG ACGAGCGTGC TAATATTCTT
GAAGAACTAC AGTTAGGTCT TAAAGGTTAC ACTTACCTAG AAGACTTCTC GTAA
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| Protein sequence | MSNWSIDDAR ASYNVNHWSQ GLYGISDDGE VTVSPDPSRP DCKIGLNEMA KDMVKSGVAL
PVLVRFPQIL HHRVNSVCQA FNQAINKYQY ENDYLLVYPI KVNQQQTVVE EILASQVAKE
VPQLGLEAGS KPELMAVLAM AQKASSVIIC NGYKDKEYIR LALIGEKLGH KVYIVLEKMS
ELKVVLEQAK ELGVTPRLGL RVRLAFQGKG KWQASGGEKS KFGLSAAQVL QVINSLKQEN
MLESLELLHF HLGSQIANIR DIRQGVSEAG RFYCELMKLG ASVKCFDVGG GLAVDYDGTR
SQSSHSMNYG LTEYANNIVS VLTDMCKEYE QPMPRIISES GRYLTAHHAV LLTDVIGTEA
YKPEDIQPPA EDAPQLLHNM WQSWIEVSGK ADQRALIEIY HDCQSDLTEV HSLFAVGQLG
LAERAWAEQV NLRVCYELQG SMSAKYRFHR PVIDELNEKL ADKFFVNFSL FQSLPDAWGI
DQVFPVMPLS GLDKAPESRA VMLDITCDSD GTVDQYVEGQ GIETTLPVPA WTQESPYLIG
FFLVGAYQEI LGDMHNLFGD TNSAVVRLDD DARTNVESVL AGDTVADVLR YVNLDAVSFM
RTYEELVNKH IAEDERANIL EELQLGLKGY TYLEDFS
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