Gene Spea_2407 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_2407 
Symbol 
ID5662800 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand
Start bp2935508 
End bp2937067 
Gene Length1560 bp 
Protein Length519 aa 
Translation table11 
GC content46% 
IMG OID641237033 
Productlytic transglycosylase catalytic 
Protein accessionYP_001502262 
Protein GI157962228 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG4623] Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value2.06679e-08 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCGTAC CATTTTTATT TGTCGCAGGG GGTATTGCTC TGTTGACAGG TTGTCAAACT 
TTAGACAACC AACAGACTTC GGAAGGGATC CCTGCCAAGC CAGTTGCAGT TGAGAAAGTC
GCCCCTAAGC CTATTGAGCC AGAGATTGTT GAGGTCGTTG AAGTCACCGA TATTTGGCAA
CGAATTCGTC TCAATATGCA GATGGAAGTC CCCGATGAAA AACTCGTTCG CCAATATCGC
GACTGGTATA TAAAACATCC TCAACATTTA GAGCGCGTAT CTGAGCGAGC GACGCCATTT
ATGTATCTGA TTGTAGATGA GATCGAGAAG CGTAATCTAC CAATCGAGTT GGCTCTGCTA
CCCATTGTTG AGAGTGCTTT CGATCCTTTT GCCTACTCAC ATGGTGCAGC ATCAGGCCTT
TGGCAATTCA CTTCGCCAAT GGCACGTCAC TTCGGCCTAC AGATGAACTG GTGGTATGAC
GGTCGCAGAG ATGTCCCCGC CGCCACGATT GCCGCTTTAG ATATGCTTGA GTACCTTCAT
GGTAAAACGG GGCAAAATTG GTTATATGCC ATTGCCGCCT ACAATACAGG TGAAGGACGC
GTGATTAACG CGGCTAAGCG CAACAAGAAA AAAGGATTAT CGACTGATTT CTTTAGTTTA
AATCTTCCAA GAGAAACTGA GCGCTATGTT CCTCAGTTAC TTGCGTTAGC CGACGTGATC
AAAAATGCCG ATAAATATGG CATTAAACTG ACCCCCATCA GCAATGAGCC ACAAATTGAA
GTCATCAATA TTGGTAGTCA AATCGATTTA GCGCTTGCCG CTGACATTGC CAATATGACC
ACATCAGAGC TACACAAGTT AAACCCAGGT TTTAACCGTT GGGCCACGGC TCCTGATGGG
CCACACAAAC TTGTATTGCC CGTTGATAAA GCCGATGCCT TTAAACTGGC ATTAAATGAC
ACTAGCACAA CCGATCGCCT CAACTGGGAA CGCTATAAGA TTGAGTCAGG CGACAGCTTA
GGATTAATCG CAAAACGTTA CCGCACTACG ATTTCGGCAT TGAAGGCAGT CAATGATATC
AATGGCAACA CCATTGTTGC CGGAAAGTAC CTGTTGATCC CCGTTGCAGC GAAGAACCTT
GATGAATACC TGTTGTCAGC CGATCAACGT CTAGCGCGTC AACAAAATAA AGCCCGTGGT
GCCAGTAAAA TTACCTATAA GGTCAGATCC GGTGATTCTC TGTGGAAAAT TGCCAAGCAG
CACAAGGTGA AAACGGCCCA ACTTGCCAGC TGGAATAGCA TGGCACCTAA AGATCCGCTG
CAGATTGGCC AGAAGCTCGT CATCTGGTCT GGTACCGTAT CTAACAAGAG TGGCTTAAGC
GAAGTGATGC GTACCGTAAA TTATAAGGTC CGTAATGGTG ACTCTTTGGC TCGCATCGCC
AATAAGTTCA ATGTCAGCGT TAGCGACCTC GTTCGTTGGA ACTCACTCGA AAAGAGCAAG
TATATTCAAC CCGGTCAAAT GCTTAAGCTG TATGTTGATA TGACAAAAGT CAGAACATAA
 
Protein sequence
MRVPFLFVAG GIALLTGCQT LDNQQTSEGI PAKPVAVEKV APKPIEPEIV EVVEVTDIWQ 
RIRLNMQMEV PDEKLVRQYR DWYIKHPQHL ERVSERATPF MYLIVDEIEK RNLPIELALL
PIVESAFDPF AYSHGAASGL WQFTSPMARH FGLQMNWWYD GRRDVPAATI AALDMLEYLH
GKTGQNWLYA IAAYNTGEGR VINAAKRNKK KGLSTDFFSL NLPRETERYV PQLLALADVI
KNADKYGIKL TPISNEPQIE VINIGSQIDL ALAADIANMT TSELHKLNPG FNRWATAPDG
PHKLVLPVDK ADAFKLALND TSTTDRLNWE RYKIESGDSL GLIAKRYRTT ISALKAVNDI
NGNTIVAGKY LLIPVAAKNL DEYLLSADQR LARQQNKARG ASKITYKVRS GDSLWKIAKQ
HKVKTAQLAS WNSMAPKDPL QIGQKLVIWS GTVSNKSGLS EVMRTVNYKV RNGDSLARIA
NKFNVSVSDL VRWNSLEKSK YIQPGQMLKL YVDMTKVRT