| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2404 |
|---|
| Symbol | |
|---|
| ID | 5662797 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 2932842 |
|---|
| End bp | 2933738 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641237030 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001502259 |
|---|
| Protein GI | 157962225 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0000653141 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTATTA CATTAAAACA GCTAGCCGTT TTTGAAGCGG TAGCTCGCAG CGGGCAAGTT
GCAAAGGCGG CCGAGATGTT GAGTTTATCG TCTCCAGCCA CCTCTATGGC ATTGTCAGAA
TTAGAGAAGC AACTGGATGC GCGTTTATTT GAACGTATTG GTAATCGCTT ACGGTTAAAC
TCTCAAGGGA GTCTACTGTT ACCTTTAGCT ACCCAAGCAC TGCAAAAGAT TGATCAAATT
GAACATGCTT TTTCGCCAGC CGGCACCGAG CTTGGCGGTA ACCTCAACGT TAGCGCTAGC
TCTACGATAG GTAATTATCT GTTAGCAAAG TCGGCGGTTG CATTTTGTCA GCAGTACACT
AATACCTTGG TGAATGTCGA TATCGAAAAT AGCCAAAAGG TCATTAATTC GGTTTTAGAG
TTTAGAAGTG AGATGGGTTT TATTGAGGGG CAATGTCTCG ACAGTCGTAT TGCCGTCGAA
GCGTGGCACA GAGACAAGTT GTTGGTTTTT TGTCATCCTG CGCACCCGCT CGCGGGTAAA
ACTGTTGCGC CGAGTGAGCT CAGCGGCATG CCCTGGGTGA TGCGAGAAGA GGGTTCTGGC
ACTCGAGATT GTTTTGTCAG TGCGGCGAAT GCTCTGGATA TGCAACCACA AGAAAAGTTC
CGATTTTCGA CTCCGGATGC GATTAAACAA GCGGTAAAGC AGGGAGCAGG GCTTGGGGTG
TTATCTGAGC TAACTCTTGA GAAAGAACTG ATCCGTAAAG AGTTGTCAGT CATCGAAGTT
GAAGGGTTAG GATTAGAGCG ACAGTTTTAT CGAATCCATC ATAAGAGCCG CCACTTTACC
CCGGTGGGTT TAGCCTTTAT TGATTTTTGC CGAACTTTTC TTAATACGGA GCACTAA
|
|---|
| Protein sequence | MRITLKQLAV FEAVARSGQV AKAAEMLSLS SPATSMALSE LEKQLDARLF ERIGNRLRLN
SQGSLLLPLA TQALQKIDQI EHAFSPAGTE LGGNLNVSAS STIGNYLLAK SAVAFCQQYT
NTLVNVDIEN SQKVINSVLE FRSEMGFIEG QCLDSRIAVE AWHRDKLLVF CHPAHPLAGK
TVAPSELSGM PWVMREEGSG TRDCFVSAAN ALDMQPQEKF RFSTPDAIKQ AVKQGAGLGV
LSELTLEKEL IRKELSVIEV EGLGLERQFY RIHHKSRHFT PVGLAFIDFC RTFLNTEH
|
|---|
| |