| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2365 |
|---|
| Symbol | |
|---|
| ID | 5662758 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 2882717 |
|---|
| End bp | 2883460 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641236987 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001502220 |
|---|
| Protein GI | 157962186 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0217] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR01033] DNA-binding regulatory protein, YebC/PmpR family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00180131 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGGAC ACAGTAAATG GGCCAACATT AAGCATCGTA AAGCGGCCCA AGATGCAAAG
CGTGGCAAAC TTTTTACAAA GTTCATTCGA GAGCTCACGG TTGCTGCCCG CGAAGGTGGT
TCAGATCCAG ACTCGAACCC ACGTTTACGT GCCGCCATCG ACAAATCCCT TTCTAACAAC
ATGACCCGAG ATACGGTCGA ACGTGCGATT AAGCGTGGCG CTGGTGAACT CGACGGGCAA
GTATTAGAGA CCATCATCTA TGAAGGTTAT GGCCCAGGTG GCACGGCGGT ATTAGTCGAG
ACGATGACTG ATAATAAAAA TCGTACAGTG TCTGGTGTGC GTAATGCATT CAGCAAATCT
GGCGGTAACT TAGGCACCGA CGGTTCTGTT GCTTATTTGT TCGATAAGAA AGGCATTATT
TCATATGAAG GTGTCGATGA AGATACGGTA ATGGACGCGG CATTAGAGGC GGGCGCCGAA
GATGTCGTGA CTAACGAAGA TGGTTCTATC GATGTGCTAA CTTCACCGGA AGACTTTGGA
AGAGTGAAGG ATGCATTGGA TAATGCAGGG CTTGAGTCGG TTAATGCTGA AGTAACTATG
GTCCCATCGA CAAAAGCCGA TTTGGACGCG GATACCGCGC CTAAATTCCT TCGTTTGATT
GATAATCTTG AAGATCATGA TGATGTTCAA GAGGTGTATC ACAACGCAGA AATTTCTGAC
GAAGTGATGG AAGGGCTGGA ATAA
|
|---|
| Protein sequence | MAGHSKWANI KHRKAAQDAK RGKLFTKFIR ELTVAAREGG SDPDSNPRLR AAIDKSLSNN
MTRDTVERAI KRGAGELDGQ VLETIIYEGY GPGGTAVLVE TMTDNKNRTV SGVRNAFSKS
GGNLGTDGSV AYLFDKKGII SYEGVDEDTV MDAALEAGAE DVVTNEDGSI DVLTSPEDFG
RVKDALDNAG LESVNAEVTM VPSTKADLDA DTAPKFLRLI DNLEDHDDVQ EVYHNAEISD
EVMEGLE
|
|---|
| |