| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2253 |
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| Symbol | |
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| ID | 5662646 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 2732249 |
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| End bp | 2734090 |
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| Gene Length | 1842 bp |
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| Protein Length | 613 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641236857 |
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| Product | signal peptide peptidase SppA, 67K type |
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| Protein accession | YP_001502108 |
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| Protein GI | 157962074 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
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| TIGRFAM ID | [TIGR00705] signal peptide peptidase SppA, 67K type
[TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00027249 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCACTA AACCCTCAAT TTTTAAAAGG ATATTCCTCC TTATTTGGAA TACCGTTAAT
GGATTAAGAA AGCTTTTCCT TAATCTTATC TTCTTCGGTG TCATTGCCCT TATCATCGTA
AGTCTTAGCA CCGACGATGG TGTAGAAGTT GAAAATGGTG CCGCACTGGT GCTCAATCTA
TCTGGCACAA TTGTTGACCA AAAACGTCAA GTCGATCCTA TCGAAGCGGC GATGAAAAGT
GGCAATGAAG CCGATGGAAG CGGCGAAATT TTACTTTCTG ATGTGCTATA CGTGATAGAT
AACGCTGCTT CTGATGAACG TATTAGTCAA CTGGTATTAG ATTTAGGCAT GTTGCGCGGT
ACAGGTATAA GCAAGCTGCA ATCTATTGGT AACGCGATTG ATTCATTCAA GGCCACTGGC
AAAACTGTTG TCGCCAATGG CAATTGGTAT GGTCAAAATC ACTATTTTCT TGCGAGCTTT
GCAGACAAAG TCTATCTAAA CCCTCAAGGG AGTGTCGAAA TTGAAGGTCT GGGCCGCTAT
CGTCTCTATT TTAAATCTGC ATTAGAGAAG CTTAAGATCA ATGCTCACGT GTTTAGAGTC
GGTACTTTCA AGTCTGCGGT AGAACCTTTT ATTCGTGATG ATATGTCTGA TGAAGCTAAA
GAAGCTAACT TAGTACTATT AAACGATTTA TGGCGAAGCT ACGCTGACAC AGTTGCGGCT
AACCGTGGCA TTAATAGCAA CGACTTATCC CTAAGTGCCG ATGATTACCT CGCCCAGCTT
GATAAAGCGG ACGGTAAGTC GGCTGATATG GCTGTTAATA TGAAATGGGT CGATGGTCTT
AAGTCTGCTG AAGAGTTTAG GCTTTCGATG GTGGATGCCG TCGGCAAGTC TAGCGATGGT
AACAGCTACA AACATATCGA TTTTTATGAT TATCTGTCTG TGACTCAAGC TCATCCTTCA
TTATCCTTAA ACGATCAAGT TGGCATCATT GTCGCAAAGG GTAATATCTT AAATGGTTCA
CAGCCTGCCG GACAAATTGG TGGCGACAGT ACATCTGAGC TACTTCGAAA AGCCCGTTTC
GATGATTCGA TAAAAGCGGT TGTACTCAGA GTCGACAGCC CAGGTGGTAG TGCCTTTGCT
TCCGAGCAGA TCAGACAAGA AGTCCTTGCA CTTAAGGCGG CTAACAAGCC TGTCGTTGTC
AGCATGGGCA GCTACGCTGC ATCGGGTGGA TACTGGATCT CTGCCAGTGC AGACTATATT
TATGCAACGC CAACAACGCT CACTGGCTCA ATTGGGATCT TCGGTATGAT CACTACCTTT
GAAGACTCAT TAGCAAGCAT TGGGGTTCAT ACAGATGGTG TCGGTACTTC TGAGTGGGCA
GGCTTCTCTG TGACTAAAGG CCTTTCACCT CAGATCCAAG CTGTCATTCA GCGCCATATT
GAACGTGGAT ACTACGACTT TATCTCGTTA GTCGCTAAAG AGCGTGATAT GAGCTTAGAT
CAGGTTGATA GCATCGCTCA GGGTCGAGTG TGGACCGGTC GTAAGGCATT AGAGCTAGGA
CTCGTCGATG GTTTAGGTGA GTTGCAAGAT GCGGTAACCA AGGCTGCTGA AATGGCTTCT
CTCGATACCT TTGATACCGA GGTGATTGAG AGAGAGTTGT CTCCACAAGA GCAATTCATT
CAAGAGATGT TCGCTACGGC TTCGAGCCAT CTACCACCGA GCGTCACTCA ATCGAGCCTA
CTTGAAACCA TCCTTAGTCA ATGGTCTGGT GTGGTTGAAG AGTTTAAAGC TTTCGATGAT
CCAAATGGTG TTTATCTTTA TTGCGATACC TGTAACTTTT AA
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| Protein sequence | MPTKPSIFKR IFLLIWNTVN GLRKLFLNLI FFGVIALIIV SLSTDDGVEV ENGAALVLNL
SGTIVDQKRQ VDPIEAAMKS GNEADGSGEI LLSDVLYVID NAASDERISQ LVLDLGMLRG
TGISKLQSIG NAIDSFKATG KTVVANGNWY GQNHYFLASF ADKVYLNPQG SVEIEGLGRY
RLYFKSALEK LKINAHVFRV GTFKSAVEPF IRDDMSDEAK EANLVLLNDL WRSYADTVAA
NRGINSNDLS LSADDYLAQL DKADGKSADM AVNMKWVDGL KSAEEFRLSM VDAVGKSSDG
NSYKHIDFYD YLSVTQAHPS LSLNDQVGII VAKGNILNGS QPAGQIGGDS TSELLRKARF
DDSIKAVVLR VDSPGGSAFA SEQIRQEVLA LKAANKPVVV SMGSYAASGG YWISASADYI
YATPTTLTGS IGIFGMITTF EDSLASIGVH TDGVGTSEWA GFSVTKGLSP QIQAVIQRHI
ERGYYDFISL VAKERDMSLD QVDSIAQGRV WTGRKALELG LVDGLGELQD AVTKAAEMAS
LDTFDTEVIE RELSPQEQFI QEMFATASSH LPPSVTQSSL LETILSQWSG VVEEFKAFDD
PNGVYLYCDT CNF
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