| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2193 |
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| Symbol | |
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| ID | 5662586 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 2659241 |
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| End bp | 2662375 |
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| Gene Length | 3135 bp |
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| Protein Length | 1044 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641236796 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_001502048 |
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| Protein GI | 157962014 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
[TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.778616 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACAGT ATTTTGTTAA TCGCCCCGTA TTTGCCAGTG TCATCTCTAT TGTCATTGTG
CTGCTGGGCT TAATTGCGAT GTTTCAATTA CCCATTGACC AATATCCTTA CATTACACCG
CCTCAGGTCA AAATATCGGC ATCCTATCCC GGTGCCACAT CCACTACCGC GGCAGAATCT
GTGGCTACAC CATTAGAGCA AGAGCTTAAT GGCCTGCCAA ATATGATTTA TATGAGCTCT
AAGAGTACCA ACTCTGGTAG CACCAACATT ACGATTACGT TTGATGTTGG TACAAACCCA
GATCTTGCGG CTGTTGATGC ACAAAACTCA ACGCAACAAG CAACGGGGAG CTTGCCTATT
GATGTGCAAA CCGAAGGGGT GTCAGTTTCC AAAGAAGCCT CTGTTGAGCT GCTCAAATTA
GCCTTAACCT CTGAAGATGA GCGTTATGAT GAAATTTATC TAAGTAACTA CGCCACTATT
AATATTCAGT CAGCCTTAAA ACGTATTCCG GGTGTGGGAC GAGTCAGAAA TACAGGTGCA
CGTAGTTATT CAATGAGAGT GTGGTTAAAC CCCGACACAA TGGCGGGTTA TGGGCTCACT
ACCTCAGATG TTATCGATGC GATAAAAGCG CAAAACAAGG AGTCGCCAGC GGGCAGTATT
GGCTCCCAAC CAAATGCTGA CACCTTGAGT ATGACTCTGC CAATCACCGC CGCAGGCCGA
ATGAGCAGTG TTCCGCAGTT TAACGAGATT ATTGTGCGTG CAAGCGCCGA TGGTTCGATT
ATACGCTTGC GTGACATTGC CAACATTGAA CTCGGTTCAT CCTCTTATAC ACTGCAATCA
CAACTCAATG GCAACAATGC CACCATCTTG CAGGTTTACT TATTGCCAGG TGCTAATGCG
CTAGAGGTTA CTAAAAAAGT AAAAAGTGAG ATGGCAAAAC TTGCTCAAAA ATTCCCTCAA
GGGATGAATT GGGAAGTCTT TTTTGATGCC TCCGTGTTTA TCGAAAACTC AATAGATGAG
GTAGTAAAGA CCCTAGTTGA AGCGCTTATT TTGGTTATTC TAGTGGTATT CATGTTTTTA
CAGAATATTC GCGCAACACT TATCCCCGCC ATTGCGGTGC CTGTTTCTTT AATTGGCACA
TTAGCCGCCA TGCTTGCCTT TGGTTTTACC ATCAATACCG TGAGTTTATT AGCGCTAGTG
CTGGCAATTG GTATTGTGGT CGATGATGCC ATTGTTGTGG TGGAAAATGT TGAACGTTTA
ATGGATGAAA AAGGGCTGAG TTCATCCCAG GCAACTAAGG TTGCCATGAA GGAGCTCTCT
GGTGCGCTTA TTGCTACCAG CCTAGTGCTT GCTGCGGTGT TTGTGCCTGT GTCCTTCTTG
TCTGGGATCA CCGGTATTAT GTACCGAGAG TTTGCTGTCG CGATAACGGT TGCGGTACTG
ATTTCAACTC TGGTGGCGCT GACACTTTCG CCGGCACTTT GTGCGTTATT ACTCAGGCCA
GGAGATAAAG CGACATCAGG CTTTTTCAAA TGGATGAATG ATCGTTTAGA CACAGCCACA
ACTAAGTATG TCGGATTGGT GGTGTTAACC AACAAGCACG CCAAACGCAG TTATCTGTTA
TTTGCCTTAA TGGTGGGCGG TGTGTACTTA ACAATGAGTT CGCTGCCATC GAGCTTTATG
CCAGATGAAG ATCAGGGTCG ATTTTTTATC GATGTGTCAC TGCCTAATGG GGCAACGGTT
AATCGTACTC AAGATGTCCT TAAGAAAGCC GAAGCCACAG TTCTTGCTCA TCCTGCGGTA
GCTTACTCGT TTACCCTAGC AGGTGAAAAC AGACGCTCGG GTTCGAATCA AGCAAACGGT
CAGTTTGAGA TAATTCTAAA ACCTTGGTCA GATCGCGTGG ACAATGATGC AACCGTACAA
AAAGTGATGA ACGAGATTAA GCAATCACTC CATGATGTGC TCGAGGCTGA ATTCAAAATT
TATTTACCTT CGGCAGTCCC AGGCCTCGGC AATGGCTCAG GTGTAGAGAT GGAGCTGCAA
GATACTTCAG GGAGTAACTT TAAAGGCTTA ATGGAAACCG CTGATGAACT GGTTGAAGCC
TTAAAACTGC AACCCGAGAT AGCGACAGCC GGATTATCAC TGCAAACTGC CATTCCGCAG
TTACACCTTA ATGTCGATGA AGCTAAAGCC ATGGCCATTG GGGTTAAGGT GTCTGATATT
TATGGCACCA TTAAAACATT TACAGACTCA TCGACGGTTA ATGACTTCAA TTTATTTGGA
CGAGTGTACC GAGTGAAAGT ACAAGCAGAA GAGCAGTATC GTCAATTTCC GGATCAAATA
GAGGATTACC ATGTTCGCTC CTCATCGGGC GCCATGGTAC CAATAGGTGT ATTGGCTACA
TCTGATTATT CGGTTGGGCC TGCAGCGCTC ACGCACTACA ACATGTTTAC CAGCGCTTCG
ATTAATGCAT CTCCTGCACC GGGTTATGCC TCAGGCGATG TGATCCGCGC GATTGAGCGG
GTTGCAAAAC CCATGCTACC TGACGAGTTT AGTTATGAGT GGACCGGAAT AACCTATCAA
GAGGTGCAGT CTGCCAATCA AACGGCTATT GCGGTGACGT TAGCGATGGT GTTTGTGTTC
TTGTTTCTTG CCGCGCTTTA TGAGAGCTGG ACTCTGCCGA TAGCGGTATT GCTCATCGCC
CCCATTGCGA TGTTAGGTGC ATCAGTGGGG ACCTTAGTGA GCGGCATGGA AAGTAATCTC
TTTTTTCAGG TGGCGTTTAT CGCACTGATC GGAATGGCTG CAAAAAACTC GATATTGATT
GTCGAGTTTG CCAACCAATT ACATAAAGAA GGTAAGAGCC GATTAGATTC AGCCATTGAG
GCGGCTAATA TGCGTTTTAG ACCTATTTTA ATGACCTCAT TAGCCTTTAT TCTTGGCGTA
CTGCCACTGG TATTTTCTGT CGGGCCAGGC GCTGTCAGCC GCCAAAGTAT CTCTATTCCT
ATTTTATGTG GCATGATTTT CGCGACAACC ATTGGCATCA TTATGGTACC GCTGTTTTTT
GTGACTACGG CAGGCTGGGT TCGCTCTAAA ATCACCGGCA AAGCCGATAC AGTGGAGGTG
TCGACTCATG CCTAA
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| Protein sequence | MAQYFVNRPV FASVISIVIV LLGLIAMFQL PIDQYPYITP PQVKISASYP GATSTTAAES
VATPLEQELN GLPNMIYMSS KSTNSGSTNI TITFDVGTNP DLAAVDAQNS TQQATGSLPI
DVQTEGVSVS KEASVELLKL ALTSEDERYD EIYLSNYATI NIQSALKRIP GVGRVRNTGA
RSYSMRVWLN PDTMAGYGLT TSDVIDAIKA QNKESPAGSI GSQPNADTLS MTLPITAAGR
MSSVPQFNEI IVRASADGSI IRLRDIANIE LGSSSYTLQS QLNGNNATIL QVYLLPGANA
LEVTKKVKSE MAKLAQKFPQ GMNWEVFFDA SVFIENSIDE VVKTLVEALI LVILVVFMFL
QNIRATLIPA IAVPVSLIGT LAAMLAFGFT INTVSLLALV LAIGIVVDDA IVVVENVERL
MDEKGLSSSQ ATKVAMKELS GALIATSLVL AAVFVPVSFL SGITGIMYRE FAVAITVAVL
ISTLVALTLS PALCALLLRP GDKATSGFFK WMNDRLDTAT TKYVGLVVLT NKHAKRSYLL
FALMVGGVYL TMSSLPSSFM PDEDQGRFFI DVSLPNGATV NRTQDVLKKA EATVLAHPAV
AYSFTLAGEN RRSGSNQANG QFEIILKPWS DRVDNDATVQ KVMNEIKQSL HDVLEAEFKI
YLPSAVPGLG NGSGVEMELQ DTSGSNFKGL METADELVEA LKLQPEIATA GLSLQTAIPQ
LHLNVDEAKA MAIGVKVSDI YGTIKTFTDS STVNDFNLFG RVYRVKVQAE EQYRQFPDQI
EDYHVRSSSG AMVPIGVLAT SDYSVGPAAL THYNMFTSAS INASPAPGYA SGDVIRAIER
VAKPMLPDEF SYEWTGITYQ EVQSANQTAI AVTLAMVFVF LFLAALYESW TLPIAVLLIA
PIAMLGASVG TLVSGMESNL FFQVAFIALI GMAAKNSILI VEFANQLHKE GKSRLDSAIE
AANMRFRPIL MTSLAFILGV LPLVFSVGPG AVSRQSISIP ILCGMIFATT IGIIMVPLFF
VTTAGWVRSK ITGKADTVEV STHA
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