| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2152 |
|---|
| Symbol | |
|---|
| ID | 5662545 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 2606276 |
|---|
| End bp | 2607211 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641236755 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001502007 |
|---|
| Protein GI | 157961973 |
|---|
| COG category | [I] Lipid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1545] Predicted nucleic-acid-binding protein containing a Zn-ribbon
[COG2030] Acyl dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGTT TTAAACCATT GCCATTGGCA ACAAAAATTT CTATGCCTTT TTGGCAAGCA
TTAAAAGAAC AAAGTATTCA ATTACAGCAA TGTAATTCAT GCGACGGTTG GGTCTTTTTT
CCTCGTAATC ATTGTAGTCA TTGCTTAGCG CATGACTTGA CGTGGAAACC CGTTAGCGGC
GATGCAACTT TATATACTTA TACCGTTGCC CGAGTACCGA CTATGGCGGA ATTTAAAGAC
GAGTCCCCAC AAATTCTCGC CGTTGTAACG CTTAAAGAAG GGGTGAGAAT GAATACCACC
CTTGTTGGCG TGCAAGAGAA AGACATCATG GTCGGCATGC ACTTAAAGCC TGTATTTGAC
CAAGTTGATG TCAAAGGTAA TACACTTTTA AGGTTCACCA GTGTTGATAG CGATTTAAGT
GTTCTAGAGT ATCAAGACCC TCTGGCTAAC CTAGCTAGAA ATAGTCAGGG ACAAGTTCAG
GTACCAATTA CCAATTTAGC TGCACTGAAT GCGTTAGTGA CCGATGAGTT TTCTCCATGG
AGTGAGCCGT TAACGGTAGA TCAAGGCTTG ATTAATGGGT TCGCTGATCT TTCTGGCGAT
GATTATTGGA TCCATACCGA CCCAGAAAAA GCCGCTAAAG AGAGCCCGTT CGGCACGACG
ATTGCTCATG GCTCGTTAGT GCAAGTGTTA CAGTCACGGT TGCCACTGAC CTTGCCATAT
GAAATTGTGG GTTTTAATAC CATGGTTAAT TACGGTTCAG ACAGATTGAG GTTTCCGACC
CCAGTCCCAG CTGGCGCACG GATCCAATCA CGCGCTAGAG TTAAATCGGT AGCCTCTACC
CATAAGGGAC TGCAACTTAT CCTCGAAGTC CATATTCATT TAGTCGATAA CGATAGGCCT
TCAGTTATCA ATGAATTGGT CATTTTCTAC CGCTAG
|
|---|
| Protein sequence | MSSFKPLPLA TKISMPFWQA LKEQSIQLQQ CNSCDGWVFF PRNHCSHCLA HDLTWKPVSG
DATLYTYTVA RVPTMAEFKD ESPQILAVVT LKEGVRMNTT LVGVQEKDIM VGMHLKPVFD
QVDVKGNTLL RFTSVDSDLS VLEYQDPLAN LARNSQGQVQ VPITNLAALN ALVTDEFSPW
SEPLTVDQGL INGFADLSGD DYWIHTDPEK AAKESPFGTT IAHGSLVQVL QSRLPLTLPY
EIVGFNTMVN YGSDRLRFPT PVPAGARIQS RARVKSVAST HKGLQLILEV HIHLVDNDRP
SVINELVIFY R
|
|---|
| |