| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2071 |
|---|
| Symbol | |
|---|
| ID | 5662464 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 2510909 |
|---|
| End bp | 2512189 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641236666 |
|---|
| Product | 3-phosphoshikimate 1-carboxyvinyltransferase |
|---|
| Protein accession | YP_001501926 |
|---|
| Protein GI | 157961892 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0128] 5-enolpyruvylshikimate-3-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR01356] 3-phosphoshikimate 1-carboxyvinyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00058789 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCAAT TACGATTAGA GCCGATCAAA AAAGTGTCAG GTACCATTAA TATTCCTGGT
TCAAAAAGTA TTTCAAATCG TGCTTTATTA TTGGCAACCC TTGCCGAAGG AACCACGACA
CTCACCAATT TACTGGACTC CGACGATATT CGTTATATGT TGGCCTCACT TAAGCAGTTA
GGTGTCAGCT ATCGTCTATC GAATAACAAC ACAGTGTGTG AATTAGACGG ATTAGCGGGG
CCATTAAACG CGAGTGAAGC GCAAACCCTA TTTTTAGGTA ATGCCGGAAC GGCCATGCGT
CCTTTGTGCG CTGCGTTAAC ACTTGGCCAA GGTGATTTCA CATTAACGGG TGAACCCCGT
ATGGAGGAGC GCCCCATTGG CGATCTAGTT GATGCGTTAC GTCAACTTGG TGCAGAGGTG
AGTTACTTAA AAAATGATGG TTTTCCACCT TTAAGTATTT CATCCACTGG ACTAAATGGT
GGCAACGTAG AAATTGCGGG CGATCTTTCT AGCCAGTTCT TAACCGCACT ACTTATGGTT
GCCCCTTTAG CGAAAGATGA TGTGAATATT CAGATTAAGG GCGAATTAGT CTCTAAACCT
TACATCGATA TTACACTCGC TTTGATGGCA CAGTTTGGGG TTAAGGTTCA AAACAACGAT
TACGCATCGT TTGTTATAAA AGCGGGGCAA CGTTATGTTT CTCCGGGTAA AGTACTGGTA
GAGGGCGATG CATCCTCTGC GTCGTATTTT CTTGCTGCAG GCGCTATTCA AGGCGGTGAA
GTGAAAGTTA CTGGCGTAGG TAAACTCAGC ATTCAAGGTG ATGTAAAGTT TGCCGATGTA
TTACAGCAGA TGGGCGCAGA GATTGAGTGG GGCGATGATT ACATTATTTC TCGTGGAGCA
AAGCTAACTG CGGTCGACCT TGACATGAAC CACATTCCTG ATGCAGCAAT GACGATTGCA
ACGACGGCGC TATTTGCAAC CGGCACAACC CATATTCGTA ATATTTATAA CTGGCGTATT
AAAGAGACAG ATCGCTTAGC GGCAATGGCA ACAGAACTGA GAAAAGTGGG GGCAATTGTC
GATGAAGGCC ACGATTACAT CAGTGTTACG CCTCCGGCGG AACTAAATAC AGCTGCTATT
GATACCTATA GCGATCATCG TATGGCAATG TGTTTTTCTA TGATGGCATT TGCCGATTGT
GGCATTACTA TTAATGAGCC TGAGTGTACC TCTAAAACCT TCCCCGATTA TTTTAATCAA
TTTAATTCGC TTGCTCATTA A
|
|---|
| Protein sequence | MNQLRLEPIK KVSGTINIPG SKSISNRALL LATLAEGTTT LTNLLDSDDI RYMLASLKQL
GVSYRLSNNN TVCELDGLAG PLNASEAQTL FLGNAGTAMR PLCAALTLGQ GDFTLTGEPR
MEERPIGDLV DALRQLGAEV SYLKNDGFPP LSISSTGLNG GNVEIAGDLS SQFLTALLMV
APLAKDDVNI QIKGELVSKP YIDITLALMA QFGVKVQNND YASFVIKAGQ RYVSPGKVLV
EGDASSASYF LAAGAIQGGE VKVTGVGKLS IQGDVKFADV LQQMGAEIEW GDDYIISRGA
KLTAVDLDMN HIPDAAMTIA TTALFATGTT HIRNIYNWRI KETDRLAAMA TELRKVGAIV
DEGHDYISVT PPAELNTAAI DTYSDHRMAM CFSMMAFADC GITINEPECT SKTFPDYFNQ
FNSLAH
|
|---|
| |