| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2038 |
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| Symbol | |
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| ID | 5662431 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 2465456 |
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| End bp | 2466976 |
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| Gene Length | 1521 bp |
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| Protein Length | 506 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641236633 |
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| Product | tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit |
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| Protein accession | YP_001501893 |
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| Protein GI | 157961859 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
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| TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00475801 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGCAAAG AAGTCCCTGT AATCAAGCAA GCCGATCTCA TTGAAAGCGT TGCTGATGCC
CTACAATATA TCTCTTATTA TCACCCAAAA GACTTTGTTG ATTCTATGGC TGAAGCCTAT
GAACGCGAAC AAAGCTCTGC AGCAAAAGAC GCGATTGCAC AAATTCTTAT CAATTCTCGT
ATGTCAGCCG AAGGTAAACG TCCACTTTGC CAAGATACCG GTATTGTGAC CTGTTTCGTT
AAGATTGGTA TGGGCGTGCA ATGGGATAAG ACAGATCTAA CCGTTCAAGA GATGGTTGAT
GAAGGCGTAC GCCGTGCTTA TACCAATCCA GATAATCCTC TTCGTGCATC GATTGTCGCC
GATCCTGCTG GCGGCCGTAA AAACACCAAA GACAACACGC CGTCAGTTGT GCATGTTGAG
ATGGTTCCTG GTAACCATGT TGACGTGGCG ATTGCAGCTA AGGGCGGTGG ATCTGAAAAC
AAATCTAAGA TGGTTATGCT TAACCCATCA GATGATATTG CAGCTTGGGT TGAGAAAACG
CTTCCTACTA TGGGCGCGGG TTGGTGCCCA CCAGGAATGC TTGGTATAGG TATTGGCGGT
ACCGCCGAAA AAGCGGCGGT AATGGCTAAA GAGTCGCTGA TGGATCCTGT CGATATTCAT
GAGCTTCAAG CTCGCGGCGC CCAAACTACC GATGAAAAGT TACGCCTAGA AATTTTTGAG
CGTGCTAATA AGCTAGGTAT TGGCGCGCAA GGCTTAGGTG GTGTAACGAC TGTACTGGAT
ATCAAGATTA AGTCAGCCCC TACACATGCG GCCTCTAAGC CTGTAGTGAT GATCCCAAAT
TGTGCCGCGA CTCGTCACGT GCATTTTCAC CTAGATGGCA CCGGTCCCGC GCTTCTAACG
CCTCCATCAT TGGAAGACTG GCCTGAAATT ACTTGGGAAG TCGGGGAGAG TGTGCGCCGT
GTCGATCTTA ACACTGTGAC CCAAGCCGAA ATGGAGCAGT GGAAGAGTGG TGACACCTTG
TTGCTTAATG GCAAGATGCT GACCGGTCGT GACGCGGCTC ATAAGCGTAT TCAAAGTTTA
ATTGAGAGCG GAGAAGGCTT ACCAGAAGGT GTCGACTTTA AAGGCAAGTT TATCTACTAC
GTCGGTCCTG TCGATCCAGT CGGTGATGAA GTGGTGGGTC CTGCTGGCCC GACTACGGCA
ACCCGGATGG ATAAGTTTAC CGATCTAATG CTAGATAAAA CAGGTTTGAT GGGCATGATC
GGTAAAGCTG AGCGTGGTCC TGCTACCGTG GAATCAATCA AGAAACATAA GTCTTGTTAC
TTGATGGCCG TTGGCGGCGC TGCGTACCTA GTTTCTAAGG CGATTAAGCA CTCTCGCGTT
GTCGCTTTTG AGGAACTCGG TATGGAAGCT ATCTATGAGT TCGACGTTAA GGATATGCCT
GTTACTGTCG CTGTAGACTC AGAAGGCGTT AATGCCCATG AAACGGGTCC AGCAATCTGG
AAAGTTAAGC TAGAAGGCTA A
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| Protein sequence | MSKEVPVIKQ ADLIESVADA LQYISYYHPK DFVDSMAEAY EREQSSAAKD AIAQILINSR
MSAEGKRPLC QDTGIVTCFV KIGMGVQWDK TDLTVQEMVD EGVRRAYTNP DNPLRASIVA
DPAGGRKNTK DNTPSVVHVE MVPGNHVDVA IAAKGGGSEN KSKMVMLNPS DDIAAWVEKT
LPTMGAGWCP PGMLGIGIGG TAEKAAVMAK ESLMDPVDIH ELQARGAQTT DEKLRLEIFE
RANKLGIGAQ GLGGVTTVLD IKIKSAPTHA ASKPVVMIPN CAATRHVHFH LDGTGPALLT
PPSLEDWPEI TWEVGESVRR VDLNTVTQAE MEQWKSGDTL LLNGKMLTGR DAAHKRIQSL
IESGEGLPEG VDFKGKFIYY VGPVDPVGDE VVGPAGPTTA TRMDKFTDLM LDKTGLMGMI
GKAERGPATV ESIKKHKSCY LMAVGGAAYL VSKAIKHSRV VAFEELGMEA IYEFDVKDMP
VTVAVDSEGV NAHETGPAIW KVKLEG
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