Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_1982 |
Symbol | |
ID | 5662376 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 2406610 |
End bp | 2407692 |
Gene Length | 1083 bp |
Protein Length | 360 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641236579 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_001501839 |
Protein GI | 157961805 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000000542821 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAAA TAATAATATT CCTTACTTTG CTTGGTGCCG TCGGCGCCTA TTTCTATTTA CAACAAGCTC CCAGCGAAAA AGTGAAAAGA GCGCGGCCGA CACCGAATGT GGTGATAACT AAGGCGTCGA TGCAAGTTAT TCGTGATGAG GTCGAGGCGC TCGGTACCAG TAAGGCAAAT GAATCGATTA CCGTCACTCC AAAAGTAACT GAAGTGGTTA CCCAAGTGAA CTTTAATGAT GGTGAACTGG TTAAGAAAGG CCGATTACTG GTTCAATTGC AGGATCGTGA GCAGCTTGCT CGTGTAACGG TAGCTAAAGT AAAAGTAAAA GATCACCAGC GAGAACTTGA GCGAATTCGT ACGCTTGTGA CGAGTCAAAC TATTGCCGAA CTTGAGCGCG ATCGCCTACA AACCCTTATC GACACAGCAA AAGCTGAATT AGTTCAAGCA GAGTCAGCCC TAAAAGATAG AAGGATTACT GCTCCATTTT CTGGTTCATT GGGCCTACGT CAAGTGAGTA TTGGCGCACT AGTAACCCCT GGCAATGCAA TCACGACCTT AGATGATATC TCAGTGATCA AATTGGACTT TTCCGTACCC GAACGCTTCT TACAGGCTCT AGCATTAGGA AAAACCGTCG AAGCGACCGC TGTGGCATTC GACGGGGAGA TATTTAACGG CAAAGTCGTT TCTATCGATA GTCGAATAAA TCCAAAGACT CGCGCAGTTA TCGTCAGAGC GGAGATCCCC AATCCAAAGC AAAGATTGCT ACCCGGAATG TTGATGAAGG TGAAGTTGAT CAAAACCAGT AGAGATGCGC TCATCCTCCC TGAATCAGCC ATCATTCCAA TCCAAGACAG GCATTATGTC TATTTGGTGA ATGAAGAAGG TGTGATAGAG CAAAAGCAGG TCTCTTTAGG TTTACGCAAA CGTGGTTGGG TCGAAATCTT GGATGGCGTA ATGTTGAATG ATCAAATCGT AATTCGTGGT TTATTGAAAG TCCGTCCAGG GGACAAAGTA AAAGTGACCC TAAGTGAGCG CTTTAGCTTT CTTAAGCAAG CGAGTGTGGA GCCAGTGGCA TGA
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Protein sequence | MKKIIIFLTL LGAVGAYFYL QQAPSEKVKR ARPTPNVVIT KASMQVIRDE VEALGTSKAN ESITVTPKVT EVVTQVNFND GELVKKGRLL VQLQDREQLA RVTVAKVKVK DHQRELERIR TLVTSQTIAE LERDRLQTLI DTAKAELVQA ESALKDRRIT APFSGSLGLR QVSIGALVTP GNAITTLDDI SVIKLDFSVP ERFLQALALG KTVEATAVAF DGEIFNGKVV SIDSRINPKT RAVIVRAEIP NPKQRLLPGM LMKVKLIKTS RDALILPESA IIPIQDRHYV YLVNEEGVIE QKQVSLGLRK RGWVEILDGV MLNDQIVIRG LLKVRPGDKV KVTLSERFSF LKQASVEPVA
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