Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_1954 |
Symbol | uvrC |
ID | 5662348 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 2377189 |
End bp | 2379018 |
Gene Length | 1830 bp |
Protein Length | 609 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641236548 |
Product | excinuclease ABC subunit C |
Protein accession | YP_001501811 |
Protein GI | 157961777 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0322] Nuclease subunit of the excinuclease complex |
TIGRFAM ID | [TIGR00194] excinuclease ABC, C subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00983646 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTGATG AGTTTAATGC CAATCAATTT TTAAAGACGG TGACATCATC TCCCGGTGTA TATCGGATGT ATGATGCTAA AGACGCTGTT ATCTATGTGG GTAAGGCCAA AGATTTAAAA AAGCGCCTTT CCTCCTACTT TCGTAAAAAC CTAGCCAATG TCAAGACTCA GGCATTGGTC TCCCATATTG CGAATATCGA TGTCACGGTA ACACACAGTG AAACCGATGC GCTGATCCTA GAAAATGATT ACATCAAGCA GTACATGCCT AAATATAATG TACTGCTTCG CGATGATAAA TCTTACCCCT ATATTCTTCT CAGTAACCAT CAACATCCTC GTTTGGCGTA TCACCGCGGT CCCAAACGCG ATAAAGGTCA GTATTTCGGA CCTTACCCCA ATGGGGGGGC TGTGCGAGAA AGCCTGCATC TTATGCAGAA AATCTTCCCT ATTCGGCAGT GTGACGACCT TTACTATAAG TCACGTTCAC GCCCTTGCCT GCAGTATCAG ATAGGAAGGT GTAGTGCGCC TTGCGTCGAT TTAGTGTCTG AGGAAGATTA TCAAGAGCAG GTAAGGTTAG CGACTTTGTT CTTGAAGGGT AAGAATCAGC AAGTGATGTC TGTGCTTGTA CAAAAGATGG AACAAGCCTC TAGTGATATG CGTTATGAAC AAGCTGCCTT ATACCGGGAT CAAATTACTG CCTTAAGACG AGTCTCTGAG CAGCAGGAAG TATCGAATGC ATCAGGAGAC ATGGATGTTA TTGGAGCTTA TTATGCTTCT GGTGTTGCTT GTTTTCACCT GTTGTTTATC CGAGAGGGAA AGATCTTTGG TAGCCGAAGT TACTATCCAA AAGTCCCTGT TAATACTGAA GTGTCCGAAG TTCTTCGTTC ATTTATGCTG CAGTTTTATC TCAACTCTGA TAGTCAACGA CTAACGCCGA AAGAGATCTT AATCAGCGAT GCCTTTGAGG AACAAGCGGA ACTCGCGGAT GCGATTCAAA GCGCACAAAA TAAGAAAGTT GAGATAAAAA CTCAGGTTCG TGGTGAAAGG GCGAGTTTTT TACGCTTAGC CTTAACCAAT GCCACGAATG CAGTTAATAC TCGCCTGTCG CATAAGAACA CTATCGAGCA GCGTTTTTTA TTATTAGAGG AAGCTATCGA GTCGACTAAT AAAATCCAGC GGATGGAATG TTTCGATATT AGCCATACTA TGGGCGAGAG CACTGTGGCA TCTTGCGTGG TGTTTAATCG AGAGGGGCCA AGCAAAGCTG ACTACCGACG CTATAATATT ACTGGGATCA CGCCCGGTGA TGATTACGCC GCAATGAAGC AGGCGATAAC AAGGCGCTTC GATAAAATTA CTGAGAAAGG AAAGATCCCC GATATATTGT TTATCGACGG TGGTATAGGT CAGTTACGCA TCGCTCAGAA AGTGGTGGAT GAGCAATTTG TAGCGCTAGA CAATGCACCG ACACTGATAG GTGTGGCAAA GGGGGAGGGA CGAAAGCCTG GGCTTGAAAC GCTTATCTAC GGTGAGAGTG AAGAGTCATT TTCACTCCCC GCAGATTCCG GAGCCTTACA CCTTATCCAA CATATTCGTG ATGAGTCTCA TCGTTTTGCG ATTACTGGCC ATAGAAATAA ACGACAGAAA ACACGTAATA CTTCTACTCT AGAGACGATT GCAGGAGTGG GACCTAAACG TCGTAAAGCA TTACTGCAAT ATTTAGGCGG ATTGCAAGAA GTTAAAGGTG CAAGTGTATC TGAATTGGCA AAAGTACCCG GTATTAGCTT AGAAATGGCA CAAACGATAC ATGATGCATT GCGAGGGTAA
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Protein sequence | MSDEFNANQF LKTVTSSPGV YRMYDAKDAV IYVGKAKDLK KRLSSYFRKN LANVKTQALV SHIANIDVTV THSETDALIL ENDYIKQYMP KYNVLLRDDK SYPYILLSNH QHPRLAYHRG PKRDKGQYFG PYPNGGAVRE SLHLMQKIFP IRQCDDLYYK SRSRPCLQYQ IGRCSAPCVD LVSEEDYQEQ VRLATLFLKG KNQQVMSVLV QKMEQASSDM RYEQAALYRD QITALRRVSE QQEVSNASGD MDVIGAYYAS GVACFHLLFI REGKIFGSRS YYPKVPVNTE VSEVLRSFML QFYLNSDSQR LTPKEILISD AFEEQAELAD AIQSAQNKKV EIKTQVRGER ASFLRLALTN ATNAVNTRLS HKNTIEQRFL LLEEAIESTN KIQRMECFDI SHTMGESTVA SCVVFNREGP SKADYRRYNI TGITPGDDYA AMKQAITRRF DKITEKGKIP DILFIDGGIG QLRIAQKVVD EQFVALDNAP TLIGVAKGEG RKPGLETLIY GESEESFSLP ADSGALHLIQ HIRDESHRFA ITGHRNKRQK TRNTSTLETI AGVGPKRRKA LLQYLGGLQE VKGASVSELA KVPGISLEMA QTIHDALRG
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