Gene Spea_1954 details

Gene Information

• Locus tag: Spea_1954
• Symbol: uvrC
• ID: 5662348
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella pealeana ATCC 700345
• Kingdom: Bacteria
• Replicon accession: NC_009901
• Strand: +
• Start bp: 2377189
• End bp: 2379018
• Gene Length: 1830 bp
• Protein Length: 609 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 641236548
• Product: excinuclease ABC subunit C
• Protein accession: YP_001501811
• Protein GI: 157961777
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0322] Nuclease subunit of the excinuclease complex
• TIGRFAM ID: [TIGR00194] excinuclease ABC, C subunit

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.00983646
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTGATG AGTTTAATGC CAATCAATTT TTAAAGACGG TGACATCATC TCCCGGTGTA 
TATCGGATGT ATGATGCTAA AGACGCTGTT ATCTATGTGG GTAAGGCCAA AGATTTAAAA 
AAGCGCCTTT CCTCCTACTT TCGTAAAAAC CTAGCCAATG TCAAGACTCA GGCATTGGTC 
TCCCATATTG CGAATATCGA TGTCACGGTA ACACACAGTG AAACCGATGC GCTGATCCTA 
GAAAATGATT ACATCAAGCA GTACATGCCT AAATATAATG TACTGCTTCG CGATGATAAA 
TCTTACCCCT ATATTCTTCT CAGTAACCAT CAACATCCTC GTTTGGCGTA TCACCGCGGT 
CCCAAACGCG ATAAAGGTCA GTATTTCGGA CCTTACCCCA ATGGGGGGGC TGTGCGAGAA 
AGCCTGCATC TTATGCAGAA AATCTTCCCT ATTCGGCAGT GTGACGACCT TTACTATAAG 
TCACGTTCAC GCCCTTGCCT GCAGTATCAG ATAGGAAGGT GTAGTGCGCC TTGCGTCGAT 
TTAGTGTCTG AGGAAGATTA TCAAGAGCAG GTAAGGTTAG CGACTTTGTT CTTGAAGGGT 
AAGAATCAGC AAGTGATGTC TGTGCTTGTA CAAAAGATGG AACAAGCCTC TAGTGATATG 
CGTTATGAAC AAGCTGCCTT ATACCGGGAT CAAATTACTG CCTTAAGACG AGTCTCTGAG 
CAGCAGGAAG TATCGAATGC ATCAGGAGAC ATGGATGTTA TTGGAGCTTA TTATGCTTCT 
GGTGTTGCTT GTTTTCACCT GTTGTTTATC CGAGAGGGAA AGATCTTTGG TAGCCGAAGT 
TACTATCCAA AAGTCCCTGT TAATACTGAA GTGTCCGAAG TTCTTCGTTC ATTTATGCTG 
CAGTTTTATC TCAACTCTGA TAGTCAACGA CTAACGCCGA AAGAGATCTT AATCAGCGAT 
GCCTTTGAGG AACAAGCGGA ACTCGCGGAT GCGATTCAAA GCGCACAAAA TAAGAAAGTT 
GAGATAAAAA CTCAGGTTCG TGGTGAAAGG GCGAGTTTTT TACGCTTAGC CTTAACCAAT 
GCCACGAATG CAGTTAATAC TCGCCTGTCG CATAAGAACA CTATCGAGCA GCGTTTTTTA 
TTATTAGAGG AAGCTATCGA GTCGACTAAT AAAATCCAGC GGATGGAATG TTTCGATATT 
AGCCATACTA TGGGCGAGAG CACTGTGGCA TCTTGCGTGG TGTTTAATCG AGAGGGGCCA 
AGCAAAGCTG ACTACCGACG CTATAATATT ACTGGGATCA CGCCCGGTGA TGATTACGCC 
GCAATGAAGC AGGCGATAAC AAGGCGCTTC GATAAAATTA CTGAGAAAGG AAAGATCCCC 
GATATATTGT TTATCGACGG TGGTATAGGT CAGTTACGCA TCGCTCAGAA AGTGGTGGAT 
GAGCAATTTG TAGCGCTAGA CAATGCACCG ACACTGATAG GTGTGGCAAA GGGGGAGGGA 
CGAAAGCCTG GGCTTGAAAC GCTTATCTAC GGTGAGAGTG AAGAGTCATT TTCACTCCCC 
GCAGATTCCG GAGCCTTACA CCTTATCCAA CATATTCGTG ATGAGTCTCA TCGTTTTGCG 
ATTACTGGCC ATAGAAATAA ACGACAGAAA ACACGTAATA CTTCTACTCT AGAGACGATT 
GCAGGAGTGG GACCTAAACG TCGTAAAGCA TTACTGCAAT ATTTAGGCGG ATTGCAAGAA 
GTTAAAGGTG CAAGTGTATC TGAATTGGCA AAAGTACCCG GTATTAGCTT AGAAATGGCA 
CAAACGATAC ATGATGCATT GCGAGGGTAA 

 

Protein sequence

MSDEFNANQF LKTVTSSPGV YRMYDAKDAV IYVGKAKDLK KRLSSYFRKN LANVKTQALV 
SHIANIDVTV THSETDALIL ENDYIKQYMP KYNVLLRDDK SYPYILLSNH QHPRLAYHRG 
PKRDKGQYFG PYPNGGAVRE SLHLMQKIFP IRQCDDLYYK SRSRPCLQYQ IGRCSAPCVD 
LVSEEDYQEQ VRLATLFLKG KNQQVMSVLV QKMEQASSDM RYEQAALYRD QITALRRVSE 
QQEVSNASGD MDVIGAYYAS GVACFHLLFI REGKIFGSRS YYPKVPVNTE VSEVLRSFML 
QFYLNSDSQR LTPKEILISD AFEEQAELAD AIQSAQNKKV EIKTQVRGER ASFLRLALTN 
ATNAVNTRLS HKNTIEQRFL LLEEAIESTN KIQRMECFDI SHTMGESTVA SCVVFNREGP 
SKADYRRYNI TGITPGDDYA AMKQAITRRF DKITEKGKIP DILFIDGGIG QLRIAQKVVD 
EQFVALDNAP TLIGVAKGEG RKPGLETLIY GESEESFSLP ADSGALHLIQ HIRDESHRFA 
ITGHRNKRQK TRNTSTLETI AGVGPKRRKA LLQYLGGLQE VKGASVSELA KVPGISLEMA 
QTIHDALRG