Gene Spea_1934 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_1934 
Symbol 
ID5662328 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand+ 
Start bp2345083 
End bp2345721 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content42% 
IMG OID641236523 
Productputative solute/DNA competence effector 
Protein accessionYP_001501791 
Protein GI157961757 
COG category[T] Signal transduction mechanisms 
COG ID[COG3109] Activator of osmoprotectant transporter ProP 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.854531 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAATCAA CAGAAAAGTT GACCGATACC AACGCTATTC TTGCGTATTT GTATGAAACA 
TTTCCTTTGT GCTTTATAGC TGAAGGCGAA ACTAAGCCAT TAAAAATTGG ATTGTTTCAA 
GATTTAGCGG AAAGGTTAGC TGATGATTCT AAAGTCAGTA AAACTCAGCT CAGAATCGCG 
TTAAGAAGAT ACACCAGTAG CTGGCGTTAC CTTAAATGCG TTAAAGCTGG CGCACAGCGT 
ATCGATTTAG ATGGCAATGC TTGTGGTGAG CTAGAACAAG AGCACATCGA CCACGCGGCA 
GCTACACTAA AAGAAAGCCA AGACAAAGCA AAGGCTAAGA GAGTGGCGCA GGCTAAGAGT 
GCGAACCCTG CAGCTAAAAC GGCAAAGAAG CCTGTTAAGA AGCCAGTTGC TAAGCGTCCA 
AAACCAGCTC AAAGCAGCAA ACCTGCAAAA GAGCCTGTTG TGGCAGAAAA TTTAACGCCT 
GCGGTTTTAA CTGAATTGAA ACCAAACCAG CGTGTTAATG TCAAATTAGG TAAAGCACCA 
GTTGCTGGTG TGATTTTGGA CATCAAAAAA GAAGATGTTC AAGTTCAGTT AGACTCTGGT 
TTAACCATCA AAGTTAGAGC TGAACACATA CTGCTGTAA
 
Protein sequence
MESTEKLTDT NAILAYLYET FPLCFIAEGE TKPLKIGLFQ DLAERLADDS KVSKTQLRIA 
LRRYTSSWRY LKCVKAGAQR IDLDGNACGE LEQEHIDHAA ATLKESQDKA KAKRVAQAKS 
ANPAAKTAKK PVKKPVAKRP KPAQSSKPAK EPVVAENLTP AVLTELKPNQ RVNVKLGKAP 
VAGVILDIKK EDVQVQLDSG LTIKVRAEHI LL